qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 170534769 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_MLBA_Sintashta Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 10 chisq: 8.027 tail: 0.626172862 dofdiff: 12 chisqdiff: -8.027 taildiff: 1 B: scale 1.000 1.000 Papuan.DG -1.091 0.249 China_Tianyuan -0.737 0.028 Karitiana.DG -0.253 0.311 Russia_Ust_Ishim_HG.DG -0.356 0.514 Ami.DG -0.970 0.219 Dai.DG -0.943 0.194 Han.DG -0.906 0.230 Georgia_Kotias.SG 1.196 -0.189 Russia_Kostenki14.SG 0.642 0.333 Iran_GanjDareh_N 1.081 -1.949 Turkey_N 1.497 1.179 Luxembourg_Loschbour.DG 1.473 2.471 A: scale 251.987 765.339 Iran_ShahrISokhta_BA2 -0.187 -0.752 Russia_MLBA_Sintashta 0.683 1.180 Indian_GreatAndaman_100BP.SG -1.581 1.020 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 8.027 taildiff: 0.626172862 B: scale 695.976 303.744 157.538 Papuan.DG 0.748 -0.637 1.225 China_Tianyuan 0.743 -0.418 0.851 Karitiana.DG -0.179 -0.053 0.343 Russia_Ust_Ishim_HG.DG -0.103 0.007 0.511 Ami.DG 0.648 -0.553 1.092 Dai.DG 0.308 -0.665 1.002 Han.DG 0.360 -0.583 0.987 Georgia_Kotias.SG -0.590 0.888 -1.254 Russia_Kostenki14.SG -0.280 0.825 -0.483 Iran_GanjDareh_N 0.825 0.034 -1.440 Turkey_N -1.297 1.906 -1.173 Luxembourg_Loschbour.DG -2.723 2.286 -0.983 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Russia_MLBA_Sintashta 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.605 0.326 0.069 totmean: 0.605 0.326 0.069 boot mean: 0.606 0.325 0.069 std. errors: 0.049 0.030 0.029 error covariance (* 1,000,000) 2355 -1218 -1137 -1218 924 293 -1137 293 843 summ: Sohi 3 0.626173 0.606 0.325 0.069 2355 -1218 -1137 924 293 ... 843 fixed pat wt dof chisq tail prob 000 0 10 8.027 0.626173 0.605 0.326 0.069 001 1 11 13.186 0.281321 0.704 0.296 0.000 010 1 11 83.525 3.05985e-13 1.071 0.000 -0.071 infeasible 100 1 11 151.400 7.71167e-27 0.000 0.629 0.371 011 2 12 89.024 7.62605e-14 1.000 0.000 0.000 101 2 12 586.017 0 0.000 1.000 0.000 110 2 12 778.316 0 0.000 0.000 1.000 best pat: 000 0.626173 - - best pat: 100 7.71167e-27 chi(nested): 143.373 p-value for nested model: 4.87142e-33 best pat: 011 7.62605e-14 not nested coeffs: 0.605 0.326 0.069 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001075 2.005460 details: Russia_MLBA_Sintashta Papuan.DG -0.002097 -4.438989 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007777 10.832965 dscore: Papuan.DG f4: 0.000505 Z: 1.068089 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001067 1.365152 details: Russia_MLBA_Sintashta China_Tianyuan -0.001375 -2.106675 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005401 5.302758 dscore: China_Tianyuan f4: 0.000571 Z: 0.838418 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000257 -0.437053 details: Russia_MLBA_Sintashta Karitiana.DG -0.000173 -0.334705 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002176 2.848601 dscore: Karitiana.DG f4: -0.000062 Z: -0.118814 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000148 -0.233121 details: Russia_MLBA_Sintashta Russia_Ust_Ishim_HG.DG 0.000023 0.043925 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003243 3.885166 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000142 Z: 0.261673 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000931 1.600722 details: Russia_MLBA_Sintashta Ami.DG -0.001821 -3.658315 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006935 8.865582 dscore: Ami.DG f4: 0.000449 Z: 0.887860 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000442 0.847313 details: Russia_MLBA_Sintashta Dai.DG -0.002188 -5.092540 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006363 9.311862 dscore: Dai.DG f4: -0.000005 Z: -0.012040 details: Iran_ShahrISokhta_BA2 Han.DG 0.000517 1.046187 details: Russia_MLBA_Sintashta Han.DG -0.001919 -4.668161 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006268 9.729897 dscore: Han.DG f4: 0.000121 Z: 0.280331 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000848 -1.117086 details: Russia_MLBA_Sintashta Georgia_Kotias.SG 0.002925 4.697407 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007961 -8.051001 dscore: Georgia_Kotias.SG f4: -0.000110 Z: -0.169047 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000403 -0.545695 details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.002715 4.193539 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003065 -3.232363 dscore: Russia_Kostenki14.SG f4: 0.000429 Z: 0.667224 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001186 2.150633 details: Russia_MLBA_Sintashta Iran_GanjDareh_N 0.000114 0.242786 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009141 -12.056701 dscore: Iran_GanjDareh_N f4: 0.000122 Z: 0.254186 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001863 -3.636135 details: Russia_MLBA_Sintashta Turkey_N 0.006276 14.736159 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007446 -11.542730 dscore: Turkey_N f4: 0.000403 Z: 0.910026 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003912 -5.434547 details: Russia_MLBA_Sintashta Luxembourg_Loschbour.DG 0.007526 12.079106 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006243 -6.854425 dscore: Luxembourg_Loschbour.DG f4: -0.000346 Z: -0.548208 gendstat: Mbuti.DG Papuan.DG 1.068 gendstat: Mbuti.DG China_Tianyuan 0.838 gendstat: Mbuti.DG Karitiana.DG -0.119 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.262 gendstat: Mbuti.DG Ami.DG 0.888 gendstat: Mbuti.DG Dai.DG -0.012 gendstat: Mbuti.DG Han.DG 0.280 gendstat: Mbuti.DG Georgia_Kotias.SG -0.169 gendstat: Mbuti.DG Russia_Kostenki14.SG 0.667 gendstat: Mbuti.DG Iran_GanjDareh_N 0.254 gendstat: Mbuti.DG Turkey_N 0.910 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.548 gendstat: Papuan.DG China_Tianyuan 0.102 gendstat: Papuan.DG Karitiana.DG -1.160 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.617 gendstat: Papuan.DG Ami.DG -0.117 gendstat: Papuan.DG Dai.DG -1.254 gendstat: Papuan.DG Han.DG -0.996 gendstat: Papuan.DG Georgia_Kotias.SG -0.907 gendstat: Papuan.DG Russia_Kostenki14.SG -0.113 gendstat: Papuan.DG Iran_GanjDareh_N -0.703 gendstat: Papuan.DG Turkey_N -0.212 gendstat: Papuan.DG Luxembourg_Loschbour.DG -1.344 gendstat: China_Tianyuan Karitiana.DG -0.925 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.575 gendstat: China_Tianyuan Ami.DG -0.190 gendstat: China_Tianyuan Dai.DG -0.960 gendstat: China_Tianyuan Han.DG -0.773 gendstat: China_Tianyuan Georgia_Kotias.SG -0.830 gendstat: China_Tianyuan Russia_Kostenki14.SG -0.171 gendstat: China_Tianyuan Iran_GanjDareh_N -0.614 gendstat: China_Tianyuan Turkey_N -0.245 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -1.154 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.337 gendstat: Karitiana.DG Ami.DG 1.119 gendstat: Karitiana.DG Dai.DG 0.143 gendstat: Karitiana.DG Han.DG 0.497 gendstat: Karitiana.DG Georgia_Kotias.SG -0.071 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.722 gendstat: Karitiana.DG Iran_GanjDareh_N 0.341 gendstat: Karitiana.DG Turkey_N 0.937 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.453 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG 0.524 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.275 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.041 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG -0.348 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.384 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.034 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.488 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.708 gendstat: Ami.DG Dai.DG -1.516 gendstat: Ami.DG Han.DG -1.175 gendstat: Ami.DG Georgia_Kotias.SG -0.814 gendstat: Ami.DG Russia_Kostenki14.SG -0.029 gendstat: Ami.DG Iran_GanjDareh_N -0.593 gendstat: Ami.DG Turkey_N -0.094 gendstat: Ami.DG Luxembourg_Loschbour.DG -1.207 gendstat: Dai.DG Han.DG 0.828 gendstat: Dai.DG Georgia_Kotias.SG -0.163 gendstat: Dai.DG Russia_Kostenki14.SG 0.659 gendstat: Dai.DG Iran_GanjDareh_N 0.258 gendstat: Dai.DG Turkey_N 0.933 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.569 gendstat: Han.DG Georgia_Kotias.SG -0.367 gendstat: Han.DG Russia_Kostenki14.SG 0.481 gendstat: Han.DG Iran_GanjDareh_N 0.002 gendstat: Han.DG Turkey_N 0.675 gendstat: Han.DG Luxembourg_Loschbour.DG -0.788 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.697 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N 0.379 gendstat: Georgia_Kotias.SG Turkey_N 0.916 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.329 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.459 gendstat: Russia_Kostenki14.SG Turkey_N -0.042 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.085 gendstat: Iran_GanjDareh_N Turkey_N 0.687 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.758 gendstat: Turkey_N Luxembourg_Loschbour.DG -1.459 ##end of qpAdm: 6.528 seconds cpu 1.028 Mbytes in use