qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 176960084 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Afanasievo Turkmenistan_Gonur_BA_1 Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 9 chisq: 9.663 tail: 0.37842662 dofdiff: 11 chisqdiff: -9.663 taildiff: 1 B: scale 1.000 1.000 1.000 Papuan.DG -1.145 0.313 -0.015 China_Tianyuan -0.844 0.541 1.282 Karitiana.DG -0.258 1.274 1.133 Russia_Ust_Ishim_HG.DG -0.377 0.353 -1.077 Ami.DG -0.998 0.271 0.026 Dai.DG -0.982 0.328 -0.183 Han.DG -0.944 0.400 -0.126 Georgia_Kotias.SG 1.423 0.359 -0.452 Russia_Kostenki14.SG 0.515 0.768 0.929 Iran_GanjDareh_N 1.380 -1.392 1.640 Turkey_N 1.315 0.571 -2.010 Luxembourg_Loschbour.DG 0.996 2.557 -0.253 A: scale 282.194 866.292 4585.987 Iran_ShahrISokhta_BA2 -0.211 -0.948 1.511 Russia_Afanasievo 0.634 1.089 0.005 Turkmenistan_Gonur_BA_1 0.651 -1.379 -0.728 Indian_GreatAndaman_100BP.SG -1.769 0.125 -1.090 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 9.663 taildiff: 0.37842662 B: scale 695.976 382.215 358.052 157.538 Papuan.DG 0.748 -0.634 -0.995 1.225 China_Tianyuan 0.743 -0.296 -1.049 0.851 Karitiana.DG -0.179 0.624 -0.839 0.343 Russia_Ust_Ishim_HG.DG -0.103 0.012 -0.363 0.511 Ami.DG 0.648 -0.505 -0.856 1.092 Dai.DG 0.308 -0.613 -0.999 1.002 Han.DG 0.360 -0.491 -0.956 0.987 Georgia_Kotias.SG -0.590 1.697 1.232 -1.254 Russia_Kostenki14.SG -0.280 0.959 -0.005 -0.483 Iran_GanjDareh_N 0.825 0.582 1.850 -1.440 Turkey_N -1.297 1.525 0.927 -1.173 Luxembourg_Loschbour.DG -2.723 1.946 -0.791 -0.983 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Afanasievo 0.000 2.000 0.000 0.000 Turkmenistan_Gonur_BA_1 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: 0.222 0.406 0.185 0.187 totmean: 0.222 0.406 0.185 0.187 boot mean: 0.148 0.401 0.237 0.214 std. errors: 5.404 0.824 4.255 1.955 error covariance (* 1,000,000) 29203597 4312500 -22960520 -10555577 4312500 679348 -3433261 -1558586 -22960520 -3433261 18103454 8290327 -10555577 -1558586 8290327 3823836 summ: Sohi 4 0.378427 0.148 0.401 0.237 0.214 29203597 4312500 -22960520 -10555577 679348 ... -3433261 -1558586 18103454 8290327 3823836 fixed pat wt dof chisq tail prob 0000 0 9 9.663 0.378427 0.222 0.406 0.185 0.187 0001 1 10 15.650 0.110095 0.714 0.462 -0.177 0.000 infeasible 0010 1 10 15.493 0.115106 0.455 0.447 0.000 0.098 0100 1 10 33.269 0.00024542 -2.582 0.000 2.337 1.245 infeasible 1000 1 10 11.337 0.331905 0.000 0.376 0.356 0.268 0011 2 11 21.812 0.0258694 0.626 0.374 0.000 0.000 0101 2 11 108.064 4.45923e-18 0.865 0.000 0.135 0.000 0110 2 11 87.618 4.87652e-14 1.078 0.000 0.000 -0.078 infeasible 1001 2 11 230.603 0 0.000 0.554 0.446 0.000 1010 2 11 59.222 1.29274e-08 0.000 0.721 0.000 0.279 1100 2 11 58.265 1.94406e-08 0.000 0.000 0.693 0.307 0111 3 12 89.016 7.65525e-14 1.000 0.000 0.000 0.000 1011 3 12 275.608 0 0.000 1.000 0.000 0.000 1101 3 12 299.809 0 0.000 0.000 1.000 0.000 1110 3 12 779.167 0 0.000 0.000 0.000 1.000 best pat: 0000 0.378427 - - best pat: 1000 0.331905 chi(nested): 1.673 p-value for nested model: 0.195819 best pat: 0011 0.0258694 not nested best pat: 0111 7.65525e-14 chi(nested): 67.203 p-value for nested model: 2.44898e-16 coeffs: 0.222 0.406 0.185 0.187 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001075 2.005460 details: Russia_Afanasievo Papuan.DG -0.001658 -3.438307 details: Turkmenistan_Gonur_BA_1 Papuan.DG -0.002779 -5.283751 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007777 10.832965 dscore: Papuan.DG f4: 0.000505 Z: 1.105646 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001067 1.365152 details: Russia_Afanasievo China_Tianyuan -0.000774 -1.179105 details: Turkmenistan_Gonur_BA_1 China_Tianyuan -0.002931 -3.872137 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005401 5.302758 dscore: China_Tianyuan f4: 0.000391 Z: 0.601498 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000257 -0.437053 details: Russia_Afanasievo Karitiana.DG 0.001634 3.157963 details: Turkmenistan_Gonur_BA_1 Karitiana.DG -0.002343 -4.150043 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002176 2.848601 dscore: Karitiana.DG f4: 0.000580 Z: 1.177376 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000148 -0.233121 details: Russia_Afanasievo Russia_Ust_Ishim_HG.DG 0.000032 0.059752 details: Turkmenistan_Gonur_BA_1 Russia_Ust_Ishim_HG.DG -0.001014 -1.742504 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003243 3.885166 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000399 Z: 0.774708 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000931 1.600722 details: Russia_Afanasievo Ami.DG -0.001321 -2.560618 details: Turkmenistan_Gonur_BA_1 Ami.DG -0.002390 -4.238842 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006935 8.865582 dscore: Ami.DG f4: 0.000525 Z: 1.073933 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000442 0.847313 details: Russia_Afanasievo Dai.DG -0.001603 -3.594483 details: Turkmenistan_Gonur_BA_1 Dai.DG -0.002791 -5.741830 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006363 9.311862 dscore: Dai.DG f4: 0.000120 Z: 0.276906 details: Iran_ShahrISokhta_BA2 Han.DG 0.000517 1.046187 details: Russia_Afanasievo Han.DG -0.001284 -3.018645 details: Turkmenistan_Gonur_BA_1 Han.DG -0.002671 -5.694459 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006268 9.729897 dscore: Han.DG f4: 0.000271 Z: 0.658788 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000848 -1.117086 details: Russia_Afanasievo Georgia_Kotias.SG 0.004439 6.952801 details: Turkmenistan_Gonur_BA_1 Georgia_Kotias.SG 0.003442 4.863397 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007961 -8.051001 dscore: Georgia_Kotias.SG f4: 0.000763 Z: 1.222382 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000403 -0.545695 details: Russia_Afanasievo Russia_Kostenki14.SG 0.002510 3.847878 details: Turkmenistan_Gonur_BA_1 Russia_Kostenki14.SG -0.000015 -0.020555 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003065 -3.232363 dscore: Russia_Kostenki14.SG f4: 0.000354 Z: 0.572132 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001186 2.150633 details: Russia_Afanasievo Iran_GanjDareh_N 0.001522 3.239735 details: Turkmenistan_Gonur_BA_1 Iran_GanjDareh_N 0.005167 9.679145 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009141 -12.056701 dscore: Iran_GanjDareh_N f4: 0.000129 Z: 0.278585 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001863 -3.636135 details: Russia_Afanasievo Turkey_N 0.003990 9.298376 details: Turkmenistan_Gonur_BA_1 Turkey_N 0.002589 5.550292 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007446 -11.542730 dscore: Turkey_N f4: 0.000293 Z: 0.699956 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003912 -5.434547 details: Russia_Afanasievo Luxembourg_Loschbour.DG 0.005091 8.151077 details: Turkmenistan_Gonur_BA_1 Luxembourg_Loschbour.DG -0.002210 -3.354146 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006243 -6.854425 dscore: Luxembourg_Loschbour.DG f4: -0.000377 Z: -0.626863 gendstat: Mbuti.DG Papuan.DG 1.106 gendstat: Mbuti.DG China_Tianyuan 0.601 gendstat: Mbuti.DG Karitiana.DG 1.177 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.775 gendstat: Mbuti.DG Ami.DG 1.074 gendstat: Mbuti.DG Dai.DG 0.277 gendstat: Mbuti.DG Han.DG 0.659 gendstat: Mbuti.DG Georgia_Kotias.SG 1.222 gendstat: Mbuti.DG Russia_Kostenki14.SG 0.572 gendstat: Mbuti.DG Iran_GanjDareh_N 0.279 gendstat: Mbuti.DG Turkey_N 0.700 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.627 gendstat: Papuan.DG China_Tianyuan -0.184 gendstat: Papuan.DG Karitiana.DG 0.164 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.192 gendstat: Papuan.DG Ami.DG 0.043 gendstat: Papuan.DG Dai.DG -0.999 gendstat: Papuan.DG Han.DG -0.637 gendstat: Papuan.DG Georgia_Kotias.SG 0.394 gendstat: Papuan.DG Russia_Kostenki14.SG -0.237 gendstat: Papuan.DG Iran_GanjDareh_N -0.716 gendstat: Papuan.DG Turkey_N -0.459 gendstat: Papuan.DG Luxembourg_Loschbour.DG -1.461 gendstat: China_Tianyuan Karitiana.DG 0.293 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG 0.011 gendstat: China_Tianyuan Ami.DG 0.219 gendstat: China_Tianyuan Dai.DG -0.468 gendstat: China_Tianyuan Han.DG -0.214 gendstat: China_Tianyuan Georgia_Kotias.SG 0.466 gendstat: China_Tianyuan Russia_Kostenki14.SG -0.046 gendstat: China_Tianyuan Iran_GanjDareh_N -0.373 gendstat: China_Tianyuan Turkey_N -0.147 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.984 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.320 gendstat: Karitiana.DG Ami.DG -0.127 gendstat: Karitiana.DG Dai.DG -1.227 gendstat: Karitiana.DG Han.DG -0.894 gendstat: Karitiana.DG Georgia_Kotias.SG 0.277 gendstat: Karitiana.DG Russia_Kostenki14.SG -0.354 gendstat: Karitiana.DG Iran_GanjDareh_N -0.878 gendstat: Karitiana.DG Turkey_N -0.611 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -1.575 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG 0.228 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.554 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.259 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.525 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.063 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.479 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.209 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -1.186 gendstat: Ami.DG Dai.DG -1.379 gendstat: Ami.DG Han.DG -0.939 gendstat: Ami.DG Georgia_Kotias.SG 0.359 gendstat: Ami.DG Russia_Kostenki14.SG -0.253 gendstat: Ami.DG Iran_GanjDareh_N -0.755 gendstat: Ami.DG Turkey_N -0.483 gendstat: Ami.DG Luxembourg_Loschbour.DG -1.381 gendstat: Dai.DG Han.DG 1.010 gendstat: Dai.DG Georgia_Kotias.SG 1.044 gendstat: Dai.DG Russia_Kostenki14.SG 0.376 gendstat: Dai.DG Iran_GanjDareh_N 0.017 gendstat: Dai.DG Turkey_N 0.414 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.861 gendstat: Han.DG Georgia_Kotias.SG 0.811 gendstat: Han.DG Russia_Kostenki14.SG 0.137 gendstat: Han.DG Iran_GanjDareh_N -0.307 gendstat: Han.DG Turkey_N 0.055 gendstat: Han.DG Luxembourg_Loschbour.DG -1.123 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.550 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -1.096 gendstat: Georgia_Kotias.SG Turkey_N -0.879 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -1.672 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.357 gendstat: Russia_Kostenki14.SG Turkey_N -0.105 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.080 gendstat: Iran_GanjDareh_N Turkey_N 0.429 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.861 gendstat: Turkey_N Luxembourg_Loschbour.DG -1.363 ##end of qpAdm: 17.160 seconds cpu 1.380 Mbytes in use