qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 173429361 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Afanasievo Turkmenistan_C_Geoksyur Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 9 chisq: 8.693 tail: 0.466115897 dofdiff: 11 chisqdiff: -8.693 taildiff: 1 B: scale 1.000 1.000 1.000 Papuan.DG 1.187 0.347 0.146 China_Tianyuan 0.782 0.244 0.387 Karitiana.DG 0.318 1.239 1.687 Russia_Ust_Ishim_HG.DG 0.457 0.524 -0.414 Ami.DG 1.064 0.374 0.589 Dai.DG 1.010 0.306 -0.969 Han.DG 0.981 0.404 -0.461 Georgia_Kotias.SG -1.393 0.455 -0.025 Russia_Kostenki14.SG -0.427 0.889 1.315 Iran_GanjDareh_N -1.437 -1.356 1.441 Turkey_N -1.247 0.749 -1.846 Luxembourg_Loschbour.DG -0.901 2.493 -0.314 A: scale 280.304 819.682 6584.620 Iran_ShahrISokhta_BA2 0.215 -0.982 1.871 Russia_Afanasievo -0.609 1.153 0.571 Turkmenistan_C_Geoksyur -0.730 -1.306 0.096 Indian_GreatAndaman_100BP.SG 1.746 -0.005 -0.405 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 8.693 taildiff: 0.466115897 B: scale 695.976 382.215 325.680 157.538 Papuan.DG 0.748 -0.634 -1.103 1.225 China_Tianyuan 0.743 -0.296 -0.679 0.851 Karitiana.DG -0.179 0.624 -0.831 0.343 Russia_Ust_Ishim_HG.DG -0.103 0.012 -0.586 0.511 Ami.DG 0.648 -0.505 -1.040 1.092 Dai.DG 0.308 -0.613 -1.020 1.002 Han.DG 0.360 -0.491 -1.010 0.987 Georgia_Kotias.SG -0.590 1.697 1.175 -1.254 Russia_Kostenki14.SG -0.280 0.959 -0.086 -0.483 Iran_GanjDareh_N 0.825 0.582 1.926 -1.440 Turkey_N -1.297 1.525 0.747 -1.173 Luxembourg_Loschbour.DG -2.723 1.946 -0.700 -0.983 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Afanasievo 0.000 2.000 0.000 0.000 Turkmenistan_C_Geoksyur 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: -0.070 0.380 0.387 0.303 totmean: -0.070 0.380 0.387 0.303 boot mean: -0.571 0.352 0.729 0.490 std. errors: 28.806 1.924 19.728 10.975 error covariance (* 1,000,000) 829793843 54572179 -568227552 -316138470 54572179 3701275 -37458185 -20815269 -568227552 -37458185 389189905 216495831 -316138470 -20815269 216495831 120457908 summ: Sohi 4 0.466116 -0.571 0.352 0.729 0.490 829793843 54572179 -568227552 -316138470 3701275 ... -37458185 -20815269 389189905 216495831 120457908 fixed pat wt dof chisq tail prob 0000 0 9 8.693 0.466116 -0.070 0.380 0.387 0.303 infeasible 0001 1 10 17.306 0.0678566 0.704 0.451 -0.155 0.000 infeasible 0010 1 10 20.369 0.0259517 0.463 0.445 0.000 0.093 0100 1 10 24.783 0.00577265 -4.126 0.000 3.258 1.868 infeasible 1000 1 10 9.677 0.469313 0.000 0.384 0.341 0.275 0011 2 11 22.049 0.0239943 0.627 0.373 0.000 0.000 0101 2 11 98.491 3.55124e-16 0.888 0.000 0.112 0.000 0110 2 11 93.990 2.74465e-15 1.072 0.000 0.000 -0.072 infeasible 1001 2 11 250.075 0 0.000 0.715 0.285 0.000 1010 2 11 59.736 1.03807e-08 0.000 0.725 0.000 0.275 1100 2 11 63.736 1.8618e-09 0.000 0.000 0.668 0.332 0111 3 12 89.067 7.48136e-14 1.000 0.000 0.000 0.000 1011 3 12 275.776 0 0.000 1.000 0.000 0.000 1101 3 12 425.144 0 0.000 0.000 1.000 0.000 1110 3 12 779.723 0 0.000 0.000 0.000 1.000 best pat: 0000 0.466116 - - best pat: 1000 0.469313 chi(nested): 0.984 p-value for nested model: 0.321232 best pat: 0011 0.0239943 not nested best pat: 0111 7.48136e-14 chi(nested): 67.018 p-value for nested model: 2.69058e-16 coeffs: -0.070 0.380 0.387 0.303 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001075 2.005460 details: Russia_Afanasievo Papuan.DG -0.001658 -3.438307 details: Turkmenistan_C_Geoksyur Papuan.DG -0.003386 -7.063360 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007777 10.832965 dscore: Papuan.DG f4: 0.000341 Z: 0.725945 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001067 1.365152 details: Russia_Afanasievo China_Tianyuan -0.000774 -1.179105 details: Turkmenistan_C_Geoksyur China_Tianyuan -0.002085 -3.026252 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005401 5.302758 dscore: China_Tianyuan f4: 0.000461 Z: 0.686787 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000257 -0.437053 details: Russia_Afanasievo Karitiana.DG 0.001634 3.157963 details: Turkmenistan_C_Geoksyur Karitiana.DG -0.002553 -4.859941 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002176 2.848601 dscore: Karitiana.DG f4: 0.000310 Z: 0.607882 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000148 -0.233121 details: Russia_Afanasievo Russia_Ust_Ishim_HG.DG 0.000032 0.059752 details: Turkmenistan_C_Geoksyur Russia_Ust_Ishim_HG.DG -0.001800 -3.049638 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003243 3.885166 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000309 Z: 0.566956 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000931 1.600722 details: Russia_Afanasievo Ami.DG -0.001321 -2.560618 details: Turkmenistan_C_Geoksyur Ami.DG -0.003194 -5.996407 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006935 8.865582 dscore: Ami.DG f4: 0.000299 Z: 0.580355 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000442 0.847313 details: Russia_Afanasievo Dai.DG -0.001603 -3.594483 details: Turkmenistan_C_Geoksyur Dai.DG -0.003131 -6.867282 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006363 9.311862 dscore: Dai.DG f4: 0.000077 Z: 0.171543 details: Iran_ShahrISokhta_BA2 Han.DG 0.000517 1.046187 details: Russia_Afanasievo Han.DG -0.001284 -3.018645 details: Turkmenistan_C_Geoksyur Han.DG -0.003102 -7.165373 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006268 9.729897 dscore: Han.DG f4: 0.000175 Z: 0.414145 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000848 -1.117086 details: Russia_Afanasievo Georgia_Kotias.SG 0.004439 6.952801 details: Turkmenistan_C_Geoksyur Georgia_Kotias.SG 0.003608 5.252950 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007961 -8.051001 dscore: Georgia_Kotias.SG f4: 0.000730 Z: 1.114285 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000403 -0.545695 details: Russia_Afanasievo Russia_Kostenki14.SG 0.002510 3.847878 details: Turkmenistan_C_Geoksyur Russia_Kostenki14.SG -0.000263 -0.376233 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003065 -3.232363 dscore: Russia_Kostenki14.SG f4: -0.000049 Z: -0.074425 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001186 2.150633 details: Russia_Afanasievo Iran_GanjDareh_N 0.001522 3.239735 details: Turkmenistan_C_Geoksyur Iran_GanjDareh_N 0.005914 12.233429 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009141 -12.056701 dscore: Iran_GanjDareh_N f4: 0.000013 Z: 0.028479 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001863 -3.636135 details: Russia_Afanasievo Turkey_N 0.003990 9.298376 details: Turkmenistan_C_Geoksyur Turkey_N 0.002295 5.095715 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007446 -11.542730 dscore: Turkey_N f4: 0.000278 Z: 0.649109 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003912 -5.434547 details: Russia_Afanasievo Luxembourg_Loschbour.DG 0.005091 8.151077 details: Turkmenistan_C_Geoksyur Luxembourg_Loschbour.DG -0.002148 -3.310567 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006243 -6.854425 dscore: Luxembourg_Loschbour.DG f4: -0.000515 Z: -0.825498 gendstat: Mbuti.DG Papuan.DG 0.726 gendstat: Mbuti.DG China_Tianyuan 0.687 gendstat: Mbuti.DG Karitiana.DG 0.608 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.567 gendstat: Mbuti.DG Ami.DG 0.580 gendstat: Mbuti.DG Dai.DG 0.172 gendstat: Mbuti.DG Han.DG 0.414 gendstat: Mbuti.DG Georgia_Kotias.SG 1.114 gendstat: Mbuti.DG Russia_Kostenki14.SG -0.074 gendstat: Mbuti.DG Iran_GanjDareh_N 0.028 gendstat: Mbuti.DG Turkey_N 0.649 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.825 gendstat: Papuan.DG China_Tianyuan 0.186 gendstat: Papuan.DG Karitiana.DG -0.067 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.057 gendstat: Papuan.DG Ami.DG -0.092 gendstat: Papuan.DG Dai.DG -0.667 gendstat: Papuan.DG Han.DG -0.442 gendstat: Papuan.DG Georgia_Kotias.SG 0.563 gendstat: Papuan.DG Russia_Kostenki14.SG -0.593 gendstat: Papuan.DG Iran_GanjDareh_N -0.616 gendstat: Papuan.DG Turkey_N -0.134 gendstat: Papuan.DG Luxembourg_Loschbour.DG -1.371 gendstat: China_Tianyuan Karitiana.DG -0.224 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.204 gendstat: China_Tianyuan Ami.DG -0.250 gendstat: China_Tianyuan Dai.DG -0.633 gendstat: China_Tianyuan Han.DG -0.486 gendstat: China_Tianyuan Georgia_Kotias.SG 0.321 gendstat: China_Tianyuan Russia_Kostenki14.SG -0.626 gendstat: China_Tianyuan Iran_GanjDareh_N -0.615 gendstat: China_Tianyuan Turkey_N -0.267 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -1.205 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.003 gendstat: Karitiana.DG Ami.DG -0.026 gendstat: Karitiana.DG Dai.DG -0.595 gendstat: Karitiana.DG Han.DG -0.375 gendstat: Karitiana.DG Georgia_Kotias.SG 0.608 gendstat: Karitiana.DG Russia_Kostenki14.SG -0.539 gendstat: Karitiana.DG Iran_GanjDareh_N -0.557 gendstat: Karitiana.DG Turkey_N -0.066 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -1.306 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG -0.017 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.443 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.262 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.581 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.493 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.512 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.059 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -1.211 gendstat: Ami.DG Dai.DG -0.706 gendstat: Ami.DG Han.DG -0.428 gendstat: Ami.DG Georgia_Kotias.SG 0.620 gendstat: Ami.DG Russia_Kostenki14.SG -0.504 gendstat: Ami.DG Iran_GanjDareh_N -0.530 gendstat: Ami.DG Turkey_N -0.041 gendstat: Ami.DG Luxembourg_Loschbour.DG -1.187 gendstat: Dai.DG Han.DG 0.635 gendstat: Dai.DG Georgia_Kotias.SG 1.030 gendstat: Dai.DG Russia_Kostenki14.SG -0.197 gendstat: Dai.DG Iran_GanjDareh_N -0.131 gendstat: Dai.DG Turkey_N 0.473 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.983 gendstat: Han.DG Georgia_Kotias.SG 0.879 gendstat: Han.DG Russia_Kostenki14.SG -0.360 gendstat: Han.DG Iran_GanjDareh_N -0.345 gendstat: Han.DG Turkey_N 0.252 gendstat: Han.DG Luxembourg_Loschbour.DG -1.157 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.989 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -1.212 gendstat: Georgia_Kotias.SG Turkey_N -0.797 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -1.725 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.095 gendstat: Russia_Kostenki14.SG Turkey_N 0.542 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -0.646 gendstat: Iran_GanjDareh_N Turkey_N 0.677 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.868 gendstat: Turkey_N Luxembourg_Loschbour.DG -1.533 ##end of qpAdm: 17.660 seconds cpu 1.380 Mbytes in use