qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 174789230 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Afanasievo Turkmenistan_Gonur_BA_2 Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 9 chisq: 11.212 tail: 0.261466662 dofdiff: 11 chisqdiff: -11.212 taildiff: 1 B: scale 1.000 1.000 1.000 Papuan.DG -1.106 0.390 0.308 China_Tianyuan -0.690 0.261 1.257 Karitiana.DG -0.076 1.062 2.316 Russia_Ust_Ishim_HG.DG -0.388 0.633 -0.410 Ami.DG -0.949 0.323 0.223 Dai.DG -0.914 0.343 -1.725 Han.DG -0.874 0.430 -0.252 Georgia_Kotias.SG 1.455 0.212 -0.185 Russia_Kostenki14.SG 0.662 0.340 0.138 Iran_GanjDareh_N 1.303 -1.836 0.697 Turkey_N 1.328 0.784 0.988 Luxembourg_Loschbour.DG 1.277 2.387 -0.435 A: scale 294.302 1060.326 6459.068 Iran_ShahrISokhta_BA2 -0.286 -1.259 1.320 Russia_Afanasievo 0.655 0.977 0.903 Turkmenistan_Gonur_BA_2 -0.081 -0.944 -0.827 Indian_GreatAndaman_100BP.SG -1.866 0.753 0.870 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 11.212 taildiff: 0.261466662 B: scale 695.976 382.215 782.245 157.538 Papuan.DG 0.748 -0.634 -0.181 1.225 China_Tianyuan 0.743 -0.296 -1.042 0.851 Karitiana.DG -0.179 0.624 -1.258 0.343 Russia_Ust_Ishim_HG.DG -0.103 0.012 -0.392 0.511 Ami.DG 0.648 -0.505 -0.212 1.092 Dai.DG 0.308 -0.613 -0.311 1.002 Han.DG 0.360 -0.491 -0.533 0.987 Georgia_Kotias.SG -0.590 1.697 0.611 -1.254 Russia_Kostenki14.SG -0.280 0.959 -0.155 -0.483 Iran_GanjDareh_N 0.825 0.582 0.405 -1.440 Turkey_N -1.297 1.525 -1.376 -1.173 Luxembourg_Loschbour.DG -2.723 1.946 -2.503 -0.983 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Afanasievo 0.000 2.000 0.000 0.000 Turkmenistan_Gonur_BA_2 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: -0.018 0.386 0.516 0.116 totmean: -0.018 0.386 0.516 0.116 boot mean: 2.076 0.567 -1.726 0.082 std. errors: 121.717 14.204 134.509 1.353 error covariance (* 1,000,000) 14814945160 1705588183 -16368466105 -152067237 1705588183 201749454 -1890904107 -16433530 -16368466105 -1890904107 18092700983 166669230 -152067237 -16433530 166669230 1831537 summ: Sohi 4 0.261467 2.076 0.567 -1.726 0.082 14814945160 1705588183 -16368466105 -152067237 201749454 ... -1890904107 -16433530 18092700983 166669230 1831537 fixed pat wt dof chisq tail prob 0000 0 9 11.212 0.261467 -0.018 0.386 0.516 0.116 infeasible 0001 1 10 12.926 0.227838 -4.224 -0.498 5.722 0.000 infeasible 0010 1 10 10.014 0.439263 0.441 0.451 0.000 0.108 0100 1 10 21.200 0.0197415 -2.339 0.000 3.189 0.150 infeasible 1000 1 10 14.799 0.139547 0.000 0.382 0.503 0.115 0011 2 11 24.502 0.0107761 0.625 0.375 0.000 0.000 0101 2 11 99.443 2.30224e-16 0.184 0.000 0.816 0.000 0110 2 11 85.487 1.27034e-13 1.070 0.000 0.000 -0.070 infeasible 1001 2 11 28.535 0.00267857 0.000 0.261 0.739 0.000 1010 2 11 60.702 6.86426e-09 0.000 0.723 0.000 0.277 1100 2 11 30.889 0.00114707 0.000 0.000 1.022 -0.022 infeasible 0111 3 12 90.814 3.43351e-14 1.000 0.000 0.000 0.000 1011 3 12 275.285 0 0.000 1.000 0.000 0.000 1101 3 12 31.525 0.00163747 0.000 0.000 1.000 0.000 1110 3 12 776.955 0 0.000 0.000 0.000 1.000 best pat: 0000 0.261467 - - best pat: 1000 0.139547 chi(nested): 3.588 p-value for nested model: 0.0582129 best pat: 0011 0.0107761 not nested best pat: 1101 0.00163747 not nested coeffs: -0.018 0.386 0.516 0.116 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001075 2.005460 details: Russia_Afanasievo Papuan.DG -0.001658 -3.438307 details: Turkmenistan_Gonur_BA_2 Papuan.DG -0.000232 -0.302620 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007777 10.832965 dscore: Papuan.DG f4: 0.000123 Z: 0.223202 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001067 1.365152 details: Russia_Afanasievo China_Tianyuan -0.000774 -1.179105 details: Turkmenistan_Gonur_BA_2 China_Tianyuan -0.001332 -1.115673 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005401 5.302758 dscore: China_Tianyuan f4: -0.000378 Z: -0.457589 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000257 -0.437053 details: Russia_Afanasievo Karitiana.DG 0.001634 3.157963 details: Turkmenistan_Gonur_BA_2 Karitiana.DG -0.001609 -1.845680 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002176 2.848601 dscore: Karitiana.DG f4: 0.000058 Z: 0.094832 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000148 -0.233121 details: Russia_Afanasievo Russia_Ust_Ishim_HG.DG 0.000032 0.059752 details: Turkmenistan_Gonur_BA_2 Russia_Ust_Ishim_HG.DG -0.000502 -0.576283 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003243 3.885166 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000132 Z: 0.216972 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000931 1.600722 details: Russia_Afanasievo Ami.DG -0.001321 -2.560618 details: Turkmenistan_Gonur_BA_2 Ami.DG -0.000271 -0.326104 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006935 8.865582 dscore: Ami.DG f4: 0.000137 Z: 0.232337 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000442 0.847313 details: Russia_Afanasievo Dai.DG -0.001603 -3.594483 details: Turkmenistan_Gonur_BA_2 Dai.DG -0.000398 -0.539874 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006363 9.311862 dscore: Dai.DG f4: -0.000094 Z: -0.178687 details: Iran_ShahrISokhta_BA2 Han.DG 0.000517 1.046187 details: Russia_Afanasievo Han.DG -0.001284 -3.018645 details: Turkmenistan_Gonur_BA_2 Han.DG -0.000681 -0.967374 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006268 9.729897 dscore: Han.DG f4: -0.000130 Z: -0.259786 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000848 -1.117086 details: Russia_Afanasievo Georgia_Kotias.SG 0.004439 6.952801 details: Turkmenistan_Gonur_BA_2 Georgia_Kotias.SG 0.000781 0.686773 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007961 -8.051001 dscore: Georgia_Kotias.SG f4: 0.001209 Z: 1.541781 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000403 -0.545695 details: Russia_Afanasievo Russia_Kostenki14.SG 0.002510 3.847878 details: Turkmenistan_Gonur_BA_2 Russia_Kostenki14.SG -0.000198 -0.181088 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003065 -3.232363 dscore: Russia_Kostenki14.SG f4: 0.000519 Z: 0.678737 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001186 2.150633 details: Russia_Afanasievo Iran_GanjDareh_N 0.001522 3.239735 details: Turkmenistan_Gonur_BA_2 Iran_GanjDareh_N 0.000518 0.642103 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009141 -12.056701 dscore: Iran_GanjDareh_N f4: -0.000226 Z: -0.400892 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001863 -3.636135 details: Russia_Afanasievo Turkey_N 0.003990 9.298376 details: Turkmenistan_Gonur_BA_2 Turkey_N -0.001759 -2.528045 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007446 -11.542730 dscore: Turkey_N f4: -0.000196 Z: -0.394634 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003912 -5.434547 details: Russia_Afanasievo Luxembourg_Loschbour.DG 0.005091 8.151077 details: Turkmenistan_Gonur_BA_2 Luxembourg_Loschbour.DG -0.003200 -3.356649 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006243 -6.854425 dscore: Luxembourg_Loschbour.DG f4: -0.000338 Z: -0.488096 gendstat: Mbuti.DG Papuan.DG 0.223 gendstat: Mbuti.DG China_Tianyuan -0.458 gendstat: Mbuti.DG Karitiana.DG 0.095 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.217 gendstat: Mbuti.DG Ami.DG 0.232 gendstat: Mbuti.DG Dai.DG -0.179 gendstat: Mbuti.DG Han.DG -0.260 gendstat: Mbuti.DG Georgia_Kotias.SG 1.542 gendstat: Mbuti.DG Russia_Kostenki14.SG 0.679 gendstat: Mbuti.DG Iran_GanjDareh_N -0.401 gendstat: Mbuti.DG Turkey_N -0.395 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.488 gendstat: Papuan.DG China_Tianyuan -0.635 gendstat: Papuan.DG Karitiana.DG -0.117 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG 0.015 gendstat: Papuan.DG Ami.DG 0.027 gendstat: Papuan.DG Dai.DG -0.481 gendstat: Papuan.DG Han.DG -0.579 gendstat: Papuan.DG Georgia_Kotias.SG 1.339 gendstat: Papuan.DG Russia_Kostenki14.SG 0.502 gendstat: Papuan.DG Iran_GanjDareh_N -0.579 gendstat: Papuan.DG Turkey_N -0.603 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.649 gendstat: China_Tianyuan Karitiana.DG 0.550 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG 0.604 gendstat: China_Tianyuan Ami.DG 0.670 gendstat: China_Tianyuan Dai.DG 0.389 gendstat: China_Tianyuan Han.DG 0.352 gendstat: China_Tianyuan Georgia_Kotias.SG 1.592 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.925 gendstat: China_Tianyuan Iran_GanjDareh_N 0.182 gendstat: China_Tianyuan Turkey_N 0.229 gendstat: China_Tianyuan Luxembourg_Loschbour.DG 0.042 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.115 gendstat: Karitiana.DG Ami.DG 0.149 gendstat: Karitiana.DG Dai.DG -0.337 gendstat: Karitiana.DG Han.DG -0.460 gendstat: Karitiana.DG Georgia_Kotias.SG 1.390 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.583 gendstat: Karitiana.DG Iran_GanjDareh_N -0.465 gendstat: Karitiana.DG Turkey_N -0.477 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.556 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG 0.008 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.389 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.463 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 1.261 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.456 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.526 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.568 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.613 gendstat: Ami.DG Dai.DG -0.615 gendstat: Ami.DG Han.DG -0.773 gendstat: Ami.DG Georgia_Kotias.SG 1.288 gendstat: Ami.DG Russia_Kostenki14.SG 0.468 gendstat: Ami.DG Iran_GanjDareh_N -0.579 gendstat: Ami.DG Turkey_N -0.613 gendstat: Ami.DG Luxembourg_Loschbour.DG -0.641 gendstat: Dai.DG Han.DG -0.187 gendstat: Dai.DG Georgia_Kotias.SG 1.668 gendstat: Dai.DG Russia_Kostenki14.SG 0.797 gendstat: Dai.DG Iran_GanjDareh_N -0.237 gendstat: Dai.DG Turkey_N -0.214 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.364 gendstat: Han.DG Georgia_Kotias.SG 1.743 gendstat: Han.DG Russia_Kostenki14.SG 0.865 gendstat: Han.DG Iran_GanjDareh_N -0.180 gendstat: Han.DG Turkey_N -0.149 gendstat: Han.DG Luxembourg_Loschbour.DG -0.318 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.724 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -1.945 gendstat: Georgia_Kotias.SG Turkey_N -2.009 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -1.813 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.948 gendstat: Russia_Kostenki14.SG Turkey_N -1.001 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.028 gendstat: Iran_GanjDareh_N Turkey_N 0.064 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.162 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.243 ##end of qpAdm: 17.408 seconds cpu 1.380 Mbytes in use