qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 60762158 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Srubnaya_Alakul.SG Uzbekistan_SappaliTepe_BA Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 10 chisq: 7.461 tail: 0.681328002 dofdiff: 12 chisqdiff: -7.461 taildiff: 1 B: scale 1.000 1.000 1.000 Yoruba.DG -0.010 0.053 1.125 Papuan.DG -1.220 0.323 0.143 China_Tianyuan -0.917 0.159 -0.515 Karitiana.DG -0.457 0.879 -1.548 Russia_Ust_Ishim_HG.DG -0.404 0.388 0.947 Dai.DG -1.039 0.319 0.191 Han.DG -1.011 0.399 0.126 Georgia_Kotias.SG 1.303 -0.320 0.499 Russia_Kostenki14.SG 0.498 0.812 -0.807 Iran_GanjDareh_N 1.221 -1.733 -1.977 Turkey_N 1.371 0.528 1.737 Jordan_PPNB 1.306 0.505 0.419 Luxembourg_Loschbour.DG 1.084 2.717 -0.323 A: scale 287.897 792.328 3587.343 Iran_ShahrISokhta_BA2 -0.251 -0.857 -0.619 Russia_Srubnaya_Alakul.SG 0.697 1.423 0.446 Uzbekistan_SappaliTepe_BA 0.622 -1.085 0.872 Indian_GreatAndaman_100BP.SG -1.751 0.254 1.630 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 7.461 taildiff: 0.681328002 B: scale 672.859 321.588 397.347 161.088 Yoruba.DG -0.225 0.040 0.017 0.058 Papuan.DG 0.757 -0.645 -1.139 1.255 China_Tianyuan 0.719 -0.570 -0.927 0.872 Karitiana.DG -0.106 0.153 -1.028 0.351 Russia_Ust_Ishim_HG.DG -0.053 0.040 -0.409 0.521 Dai.DG 0.369 -0.578 -1.092 1.027 Han.DG 0.420 -0.475 -1.067 1.009 Georgia_Kotias.SG -0.538 0.917 1.384 -1.277 Russia_Kostenki14.SG -0.215 1.042 0.058 -0.484 Iran_GanjDareh_N 0.860 -0.086 1.776 -1.468 Turkey_N -1.166 1.546 1.112 -1.197 Jordan_PPNB -1.584 1.257 0.759 -1.321 Luxembourg_Loschbour.DG -2.567 2.402 -0.635 -0.997 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Srubnaya_Alakul.SG 0.000 2.000 0.000 0.000 Uzbekistan_SappaliTepe_BA 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: 0.527 0.343 0.051 0.079 totmean: 0.527 0.343 0.051 0.079 boot mean: 0.548 0.345 0.035 0.072 std. errors: 0.318 0.079 0.262 0.124 error covariance (* 1,000,000) 101102 20197 -82243 -39056 20197 6192 -18337 -8052 -82243 -18337 68898 31682 -39056 -8052 31682 15426 summ: Sohi 4 0.681328 0.548 0.345 0.035 0.072 101102 20197 -82243 -39056 6192 ... -18337 -8052 68898 31682 15426 fixed pat wt dof chisq tail prob 0000 0 10 7.461 0.681328 0.527 0.343 0.051 0.079 0001 1 11 15.342 0.167385 0.729 0.376 -0.105 0.000 infeasible 0010 1 11 12.321 0.340033 0.594 0.354 0.000 0.052 0100 1 11 55.159 7.246e-08 -1.371 0.000 1.578 0.793 infeasible 1000 1 11 18.310 0.0746696 0.000 0.248 0.480 0.272 0011 2 12 11.065 0.523342 0.668 0.332 0.000 0.000 0101 2 12 85.381 3.84474e-13 0.830 0.000 0.170 0.000 0110 2 12 84.474 5.7431e-13 1.073 0.000 0.000 -0.073 infeasible 1001 2 12 269.558 0 0.000 0.387 0.613 0.000 1010 2 12 131.519 3.05776e-22 0.000 0.683 0.000 0.317 1100 2 12 50.849 9.90287e-07 0.000 0.000 0.705 0.295 0111 3 13 88.337 2.9042e-13 1.000 0.000 0.000 0.000 1011 3 13 401.944 0 0.000 1.000 0.000 0.000 1101 3 13 339.057 0 0.000 0.000 1.000 0.000 1110 3 13 785.350 0 0.000 0.000 0.000 1.000 best pat: 0000 0.681328 - - best pat: 1000 0.0746696 chi(nested): 10.849 p-value for nested model: 0.000988689 best pat: 0011 0.523342 not nested best pat: 0111 2.9042e-13 chi(nested): 77.272 p-value for nested model: 1.48982e-18 coeffs: 0.527 0.343 0.051 0.079 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000334 -1.270060 details: Russia_Srubnaya_Alakul.SG Yoruba.DG 0.000125 0.536402 details: Uzbekistan_SappaliTepe_BA Yoruba.DG 0.000043 0.190686 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000360 1.119658 dscore: Yoruba.DG f4: -0.000102 Z: -0.461414 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001125 2.097453 details: Russia_Srubnaya_Alakul.SG Papuan.DG -0.002006 -4.010930 details: Uzbekistan_SappaliTepe_BA Papuan.DG -0.002867 -6.059287 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007791 10.902990 dscore: Papuan.DG f4: 0.000374 Z: 0.807283 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001068 1.365551 details: Russia_Srubnaya_Alakul.SG China_Tianyuan -0.001773 -2.456939 details: Uzbekistan_SappaliTepe_BA China_Tianyuan -0.002333 -3.423510 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.339075 dscore: China_Tianyuan f4: 0.000264 Z: 0.391072 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000158 -0.267138 details: Russia_Srubnaya_Alakul.SG Karitiana.DG 0.000476 0.878414 details: Uzbekistan_SappaliTepe_BA Karitiana.DG -0.002587 -5.076209 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002181 2.861997 dscore: Karitiana.DG f4: 0.000119 Z: 0.232887 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000079 -0.124028 details: Russia_Srubnaya_Alakul.SG Russia_Ust_Ishim_HG.DG 0.000124 0.214720 details: Uzbekistan_SappaliTepe_BA Russia_Ust_Ishim_HG.DG -0.001029 -1.895810 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003232 3.914230 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000204 Z: 0.376980 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000549 1.050750 details: Russia_Srubnaya_Alakul.SG Dai.DG -0.001798 -3.939821 details: Uzbekistan_SappaliTepe_BA Dai.DG -0.002749 -6.251130 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006373 9.354594 dscore: Dai.DG f4: 0.000036 Z: 0.079933 details: Iran_ShahrISokhta_BA2 Han.DG 0.000624 1.260771 details: Russia_Srubnaya_Alakul.SG Han.DG -0.001477 -3.340823 details: Uzbekistan_SappaliTepe_BA Han.DG -0.002684 -6.407207 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006264 9.746472 dscore: Han.DG f4: 0.000180 Z: 0.424246 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000800 -1.043358 details: Russia_Srubnaya_Alakul.SG Georgia_Kotias.SG 0.002851 4.276774 details: Uzbekistan_SappaliTepe_BA Georgia_Kotias.SG 0.003482 5.311699 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007927 -8.024587 dscore: Georgia_Kotias.SG f4: 0.000108 Z: 0.165941 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000320 -0.432656 details: Russia_Srubnaya_Alakul.SG Russia_Kostenki14.SG 0.003240 4.651612 details: Uzbekistan_SappaliTepe_BA Russia_Kostenki14.SG 0.000147 0.213509 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003006 -3.168085 dscore: Russia_Kostenki14.SG f4: 0.000711 Z: 1.110049 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001278 2.306034 details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N -0.000266 -0.526319 details: Uzbekistan_SappaliTepe_BA Iran_GanjDareh_N 0.004470 9.077981 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009113 -12.001885 dscore: Iran_GanjDareh_N f4: 0.000091 Z: 0.192137 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001733 -3.362566 details: Russia_Srubnaya_Alakul.SG Turkey_N 0.004807 10.656711 details: Uzbekistan_SappaliTepe_BA Turkey_N 0.002800 6.383562 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007432 -11.510838 dscore: Turkey_N f4: 0.000290 Z: 0.662567 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002354 -2.954664 details: Russia_Srubnaya_Alakul.SG Jordan_PPNB 0.003910 5.269617 details: Uzbekistan_SappaliTepe_BA Jordan_PPNB 0.001911 2.839889 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008202 -7.785529 dscore: Jordan_PPNB f4: -0.000451 Z: -0.653727 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003816 -5.295356 details: Russia_Srubnaya_Alakul.SG Luxembourg_Loschbour.DG 0.007468 11.193705 details: Uzbekistan_SappaliTepe_BA Luxembourg_Loschbour.DG -0.001597 -2.579686 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006191 -6.834554 dscore: Luxembourg_Loschbour.DG f4: -0.000024 Z: -0.038610 gendstat: Mbuti.DG Yoruba.DG -0.461 gendstat: Mbuti.DG Papuan.DG 0.807 gendstat: Mbuti.DG China_Tianyuan 0.391 gendstat: Mbuti.DG Karitiana.DG 0.233 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.377 gendstat: Mbuti.DG Dai.DG 0.080 gendstat: Mbuti.DG Han.DG 0.424 gendstat: Mbuti.DG Georgia_Kotias.SG 0.166 gendstat: Mbuti.DG Russia_Kostenki14.SG 1.110 gendstat: Mbuti.DG Iran_GanjDareh_N 0.192 gendstat: Mbuti.DG Turkey_N 0.663 gendstat: Mbuti.DG Jordan_PPNB -0.654 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.039 gendstat: Yoruba.DG Papuan.DG 1.104 gendstat: Yoruba.DG China_Tianyuan 0.576 gendstat: Yoruba.DG Karitiana.DG 0.454 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 0.597 gendstat: Yoruba.DG Dai.DG 0.344 gendstat: Yoruba.DG Han.DG 0.739 gendstat: Yoruba.DG Georgia_Kotias.SG 0.341 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.325 gendstat: Yoruba.DG Iran_GanjDareh_N 0.439 gendstat: Yoruba.DG Turkey_N 1.017 gendstat: Yoruba.DG Jordan_PPNB -0.527 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.133 gendstat: Papuan.DG China_Tianyuan -0.169 gendstat: Papuan.DG Karitiana.DG -0.531 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.293 gendstat: Papuan.DG Dai.DG -0.849 gendstat: Papuan.DG Han.DG -0.511 gendstat: Papuan.DG Georgia_Kotias.SG -0.394 gendstat: Papuan.DG Russia_Kostenki14.SG 0.507 gendstat: Papuan.DG Iran_GanjDareh_N -0.526 gendstat: Papuan.DG Turkey_N -0.178 gendstat: Papuan.DG Jordan_PPNB -1.119 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.637 gendstat: China_Tianyuan Karitiana.DG -0.211 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.081 gendstat: China_Tianyuan Dai.DG -0.380 gendstat: China_Tianyuan Han.DG -0.144 gendstat: China_Tianyuan Georgia_Kotias.SG -0.188 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.538 gendstat: China_Tianyuan Iran_GanjDareh_N -0.234 gendstat: China_Tianyuan Turkey_N 0.038 gendstat: China_Tianyuan Jordan_PPNB -0.797 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.364 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.141 gendstat: Karitiana.DG Dai.DG -0.215 gendstat: Karitiana.DG Han.DG 0.170 gendstat: Karitiana.DG Georgia_Kotias.SG -0.017 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.891 gendstat: Karitiana.DG Iran_GanjDareh_N -0.052 gendstat: Karitiana.DG Turkey_N 0.354 gendstat: Karitiana.DG Jordan_PPNB -0.778 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.233 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.316 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.045 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG -0.134 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.691 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.190 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.165 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -0.887 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.336 gendstat: Dai.DG Han.DG 0.956 gendstat: Dai.DG Georgia_Kotias.SG 0.112 gendstat: Dai.DG Russia_Kostenki14.SG 1.039 gendstat: Dai.DG Iran_GanjDareh_N 0.115 gendstat: Dai.DG Turkey_N 0.597 gendstat: Dai.DG Jordan_PPNB -0.703 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.102 gendstat: Han.DG Georgia_Kotias.SG -0.116 gendstat: Han.DG Russia_Kostenki14.SG 0.839 gendstat: Han.DG Iran_GanjDareh_N -0.187 gendstat: Han.DG Turkey_N 0.268 gendstat: Han.DG Jordan_PPNB -0.918 gendstat: Han.DG Luxembourg_Loschbour.DG -0.348 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.789 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.027 gendstat: Georgia_Kotias.SG Turkey_N 0.328 gendstat: Georgia_Kotias.SG Jordan_PPNB -0.714 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.186 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.948 gendstat: Russia_Kostenki14.SG Turkey_N -0.700 gendstat: Russia_Kostenki14.SG Jordan_PPNB -1.439 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.057 gendstat: Iran_GanjDareh_N Turkey_N 0.498 gendstat: Iran_GanjDareh_N Jordan_PPNB -0.791 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.192 gendstat: Turkey_N Jordan_PPNB -1.260 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.628 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 0.574 ##end of qpAdm: 19.681 seconds cpu 1.483 Mbytes in use