qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 54751710 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Czech_CordedWare Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 11 chisq: 9.664 tail: 0.560851728 dofdiff: 13 chisqdiff: -9.664 taildiff: 1 B: scale 1.000 1.000 Yoruba.DG -0.031 0.197 Papuan.DG -1.067 0.418 China_Tianyuan -0.660 0.257 Karitiana.DG -0.192 0.414 Russia_Ust_Ishim_HG.DG -0.331 0.611 Dai.DG -0.904 0.323 Han.DG -0.876 0.355 Georgia_Kotias.SG 1.276 -0.183 Russia_Kostenki14.SG 0.677 0.341 Iran_GanjDareh_N 1.055 -2.176 Turkey_N 1.490 0.928 Jordan_PPNB 1.398 0.555 Luxembourg_Loschbour.DG 1.523 2.427 A: scale 254.913 852.259 Iran_ShahrISokhta_BA2 -0.219 -0.813 Czech_CordedWare 0.725 1.018 Indian_GreatAndaman_100BP.SG -1.558 1.142 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 9.664 taildiff: 0.560851728 B: scale 672.859 304.358 161.088 Yoruba.DG -0.225 0.021 0.058 Papuan.DG 0.757 -0.587 1.255 China_Tianyuan 0.719 -0.241 0.872 Karitiana.DG -0.106 0.064 0.351 Russia_Ust_Ishim_HG.DG -0.053 0.027 0.521 Dai.DG 0.369 -0.598 1.027 Han.DG 0.420 -0.532 1.009 Georgia_Kotias.SG -0.538 1.113 -1.277 Russia_Kostenki14.SG -0.215 0.907 -0.484 Iran_GanjDareh_N 0.860 0.193 -1.468 Turkey_N -1.166 1.769 -1.197 Jordan_PPNB -1.584 1.354 -1.321 Luxembourg_Loschbour.DG -2.567 2.211 -0.997 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Czech_CordedWare 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.562 0.353 0.085 totmean: 0.562 0.353 0.085 boot mean: 0.563 0.352 0.085 std. errors: 0.054 0.035 0.029 error covariance (* 1,000,000) 2912 -1639 -1274 -1639 1218 421 -1274 421 853 summ: Sohi 3 0.560852 0.563 0.352 0.085 2912 -1639 -1274 1218 421 ... 853 fixed pat wt dof chisq tail prob 000 0 11 9.664 0.560852 0.562 0.353 0.085 001 1 12 18.031 0.114741 0.692 0.308 0.000 010 1 12 84.529 5.60496e-13 1.074 0.000 -0.074 infeasible 100 1 12 125.231 5.57289e-21 0.000 0.650 0.350 011 2 13 88.305 2.94546e-13 1.000 0.000 0.000 101 2 13 535.802 0 0.000 1.000 0.000 110 2 13 784.470 0 0.000 0.000 1.000 best pat: 000 0.560852 - - best pat: 100 5.57289e-21 chi(nested): 115.568 p-value for nested model: 5.91094e-27 best pat: 011 2.94546e-13 not nested coeffs: 0.562 0.353 0.085 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000334 -1.270060 details: Czech_CordedWare Yoruba.DG 0.000069 0.332808 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000360 1.119658 dscore: Yoruba.DG f4: -0.000132 Z: -0.597359 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001125 2.097453 details: Czech_CordedWare Papuan.DG -0.001929 -4.355691 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007791 10.902990 dscore: Papuan.DG f4: 0.000616 Z: 1.340996 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001068 1.365551 details: Czech_CordedWare China_Tianyuan -0.000793 -1.266020 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.339075 dscore: China_Tianyuan f4: 0.000782 Z: 1.168742 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000158 -0.267138 details: Czech_CordedWare Karitiana.DG 0.000211 0.426504 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002181 2.861997 dscore: Karitiana.DG f4: 0.000172 Z: 0.336145 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000079 -0.124028 details: Czech_CordedWare Russia_Ust_Ishim_HG.DG 0.000090 0.175781 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003232 3.914230 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000263 Z: 0.490235 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000549 1.050750 details: Czech_CordedWare Dai.DG -0.001964 -4.693665 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006373 9.354594 dscore: Dai.DG f4: 0.000159 Z: 0.354313 details: Iran_ShahrISokhta_BA2 Han.DG 0.000624 1.260771 details: Czech_CordedWare Han.DG -0.001749 -4.341579 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006264 9.746472 dscore: Han.DG f4: 0.000267 Z: 0.629674 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000800 -1.043358 details: Czech_CordedWare Georgia_Kotias.SG 0.003656 5.843435 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007927 -8.024587 dscore: Georgia_Kotias.SG f4: 0.000165 Z: 0.251820 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000320 -0.432656 details: Czech_CordedWare Russia_Kostenki14.SG 0.002979 4.645624 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003006 -3.168085 dscore: Russia_Kostenki14.SG f4: 0.000615 Z: 0.960474 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001278 2.306034 details: Czech_CordedWare Iran_GanjDareh_N 0.000636 1.366462 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009113 -12.001885 dscore: Iran_GanjDareh_N f4: 0.000165 Z: 0.344172 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001733 -3.362566 details: Czech_CordedWare Turkey_N 0.005814 13.961467 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007432 -11.510838 dscore: Turkey_N f4: 0.000445 Z: 1.012532 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002354 -2.954664 details: Czech_CordedWare Jordan_PPNB 0.004448 6.812475 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008202 -7.785529 dscore: Jordan_PPNB f4: -0.000452 Z: -0.657142 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003816 -5.295356 details: Czech_CordedWare Luxembourg_Loschbour.DG 0.007265 12.133578 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006191 -6.834554 dscore: Luxembourg_Loschbour.DG f4: -0.000107 Z: -0.172894 gendstat: Mbuti.DG Yoruba.DG -0.597 gendstat: Mbuti.DG Papuan.DG 1.341 gendstat: Mbuti.DG China_Tianyuan 1.169 gendstat: Mbuti.DG Karitiana.DG 0.336 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.490 gendstat: Mbuti.DG Dai.DG 0.354 gendstat: Mbuti.DG Han.DG 0.630 gendstat: Mbuti.DG Georgia_Kotias.SG 0.252 gendstat: Mbuti.DG Russia_Kostenki14.SG 0.960 gendstat: Mbuti.DG Iran_GanjDareh_N 0.344 gendstat: Mbuti.DG Turkey_N 1.013 gendstat: Mbuti.DG Jordan_PPNB -0.657 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.173 gendstat: Yoruba.DG Papuan.DG 1.731 gendstat: Yoruba.DG China_Tianyuan 1.449 gendstat: Yoruba.DG Karitiana.DG 0.625 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 0.773 gendstat: Yoruba.DG Dai.DG 0.724 gendstat: Yoruba.DG Han.DG 1.044 gendstat: Yoruba.DG Georgia_Kotias.SG 0.479 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.221 gendstat: Yoruba.DG Iran_GanjDareh_N 0.666 gendstat: Yoruba.DG Turkey_N 1.486 gendstat: Yoruba.DG Jordan_PPNB -0.485 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.043 gendstat: Papuan.DG China_Tianyuan 0.257 gendstat: Papuan.DG Karitiana.DG -0.923 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.604 gendstat: Papuan.DG Dai.DG -1.141 gendstat: Papuan.DG Han.DG -0.915 gendstat: Papuan.DG Georgia_Kotias.SG -0.665 gendstat: Papuan.DG Russia_Kostenki14.SG -0.001 gendstat: Papuan.DG Iran_GanjDareh_N -0.832 gendstat: Papuan.DG Turkey_N -0.356 gendstat: Papuan.DG Jordan_PPNB -1.441 gendstat: Papuan.DG Luxembourg_Loschbour.DG -1.154 gendstat: China_Tianyuan Karitiana.DG -0.903 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.702 gendstat: China_Tianyuan Dai.DG -1.049 gendstat: China_Tianyuan Han.DG -0.893 gendstat: China_Tianyuan Georgia_Kotias.SG -0.749 gendstat: China_Tianyuan Russia_Kostenki14.SG -0.203 gendstat: China_Tianyuan Iran_GanjDareh_N -0.844 gendstat: China_Tianyuan Turkey_N -0.494 gendstat: China_Tianyuan Jordan_PPNB -1.388 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -1.132 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.153 gendstat: Karitiana.DG Dai.DG -0.033 gendstat: Karitiana.DG Han.DG 0.265 gendstat: Karitiana.DG Georgia_Kotias.SG -0.009 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.662 gendstat: Karitiana.DG Iran_GanjDareh_N -0.012 gendstat: Karitiana.DG Turkey_N 0.559 gendstat: Karitiana.DG Jordan_PPNB -0.853 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.452 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.197 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.008 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG -0.136 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.479 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.166 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.347 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -0.969 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.551 gendstat: Dai.DG Han.DG 0.723 gendstat: Dai.DG Georgia_Kotias.SG 0.010 gendstat: Dai.DG Russia_Kostenki14.SG 0.702 gendstat: Dai.DG Iran_GanjDareh_N 0.012 gendstat: Dai.DG Turkey_N 0.664 gendstat: Dai.DG Jordan_PPNB -0.883 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.453 gendstat: Han.DG Georgia_Kotias.SG -0.162 gendstat: Han.DG Russia_Kostenki14.SG 0.549 gendstat: Han.DG Iran_GanjDareh_N -0.212 gendstat: Han.DG Turkey_N 0.427 gendstat: Han.DG Jordan_PPNB -1.049 gendstat: Han.DG Luxembourg_Loschbour.DG -0.642 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.585 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.000 gendstat: Georgia_Kotias.SG Turkey_N 0.505 gendstat: Georgia_Kotias.SG Jordan_PPNB -0.782 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.389 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.680 gendstat: Russia_Kostenki14.SG Turkey_N -0.280 gendstat: Russia_Kostenki14.SG Jordan_PPNB -1.330 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.038 gendstat: Iran_GanjDareh_N Turkey_N 0.698 gendstat: Iran_GanjDareh_N Jordan_PPNB -0.900 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.452 gendstat: Turkey_N Jordan_PPNB -1.527 gendstat: Turkey_N Luxembourg_Loschbour.DG -1.107 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 0.465 ##end of qpAdm: 7.308 seconds cpu 1.110 Mbytes in use