qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 65387485 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_MBA_Poltavka Kazakhstan_Kumsay_EBA Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 10 chisq: 9.701 tail: 0.467133301 dofdiff: 12 chisqdiff: -9.701 taildiff: 1 B: scale 1.000 1.000 1.000 Yoruba.DG -0.035 0.074 0.284 Papuan.DG -1.086 0.267 0.544 China_Tianyuan -0.704 0.787 -0.412 Karitiana.DG -0.022 2.599 -1.311 Russia_Ust_Ishim_HG.DG -0.332 0.363 0.778 Dai.DG -0.886 0.711 0.081 Han.DG -0.847 0.852 0.019 Georgia_Kotias.SG 1.423 0.323 -0.324 Russia_Kostenki14.SG 0.792 1.181 -0.308 Iran_GanjDareh_N 1.234 -0.631 -2.333 Turkey_N 1.346 0.014 0.725 Jordan_PPNB 1.246 -0.155 0.309 Luxembourg_Loschbour.DG 1.473 1.505 1.964 A: scale 301.820 748.808 1464.188 Iran_ShahrISokhta_BA2 -0.318 -0.411 -1.246 Russia_MBA_Poltavka 0.719 0.668 0.998 Kazakhstan_Kumsay_EBA 0.224 1.690 -0.881 Indian_GreatAndaman_100BP.SG -1.826 0.726 0.822 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 9.701 taildiff: 0.467133301 B: scale 662.965 356.409 354.018 160.675 Yoruba.DG -0.228 0.041 0.004 0.061 Papuan.DG 0.739 -0.473 0.107 1.255 China_Tianyuan 0.674 -0.247 0.800 0.870 Karitiana.DG -0.144 0.571 2.509 0.357 Russia_Ust_Ishim_HG.DG -0.094 0.174 0.237 0.518 Dai.DG 0.331 -0.456 0.466 1.027 Han.DG 0.380 -0.348 0.632 1.009 Georgia_Kotias.SG -0.566 1.464 0.987 -1.275 Russia_Kostenki14.SG -0.238 1.303 1.533 -0.483 Iran_GanjDareh_N 0.800 0.381 0.457 -1.461 Turkey_N -1.194 1.442 0.383 -1.194 Jordan_PPNB -1.607 0.854 0.010 -1.334 Luxembourg_Loschbour.DG -2.577 2.287 1.304 -0.998 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_MBA_Poltavka 0.000 2.000 0.000 0.000 Kazakhstan_Kumsay_EBA 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: 0.525 0.490 -0.104 0.089 totmean: 0.525 0.490 -0.104 0.089 boot mean: 0.526 0.491 -0.106 0.089 std. errors: 0.064 0.064 0.069 0.031 error covariance (* 1,000,000) 4137 -1746 -983 -1408 -1746 4075 -3299 970 -983 -3299 4826 -545 -1408 970 -545 983 summ: Sohi 4 0.467133 0.526 0.491 -0.106 0.089 4137 -1746 -983 -1408 4075 ... -3299 970 4826 -545 983 fixed pat wt dof chisq tail prob 0000 0 10 9.701 0.467133 0.525 0.490 -0.104 0.089 infeasible 0001 1 11 18.410 0.0725393 0.656 0.413 -0.069 0.000 infeasible 0010 1 11 12.057 0.359375 0.508 0.416 0.000 0.077 0100 1 11 65.141 1.01387e-09 0.759 0.000 0.266 -0.025 infeasible 1000 1 11 78.720 2.60817e-12 0.000 0.752 -0.028 0.276 infeasible 0011 2 12 19.278 0.0820451 0.631 0.369 0.000 0.000 0101 2 12 66.790 1.27024e-09 0.732 0.000 0.268 0.000 0110 2 12 87.680 1.38631e-13 1.075 0.000 0.000 -0.075 infeasible 1001 2 12 212.723 0 0.000 0.387 0.613 0.000 1010 2 12 80.289 3.63478e-12 0.000 0.730 0.000 0.270 1100 2 12 188.740 0 0.000 0.000 0.822 0.178 0111 3 13 90.221 1.26808e-13 1.000 0.000 0.000 0.000 1011 3 13 271.067 0 0.000 1.000 0.000 0.000 1101 3 13 229.436 0 0.000 0.000 1.000 0.000 1110 3 13 782.382 0 0.000 0.000 0.000 1.000 best pat: 0000 0.467133 - - best pat: 1000 0 chi(nested): 69.019 p-value for nested model: 9.75192e-17 best pat: 0011 0.0820451 not nested best pat: 0111 1.26808e-13 chi(nested): 70.943 p-value for nested model: 3.67678e-17 coeffs: 0.525 0.490 -0.104 0.089 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000345 -1.312923 details: Russia_MBA_Poltavka Yoruba.DG 0.000115 0.496158 details: Kazakhstan_Kumsay_EBA Yoruba.DG 0.000011 0.040191 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000382 1.183513 dscore: Yoruba.DG f4: -0.000092 Z: -0.407867 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001115 2.076381 details: Russia_MBA_Poltavka Papuan.DG -0.001327 -2.682021 details: Kazakhstan_Kumsay_EBA Papuan.DG 0.000302 0.527928 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007809 10.881474 dscore: Papuan.DG f4: 0.000596 Z: 1.273159 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001016 1.299368 details: Russia_MBA_Poltavka China_Tianyuan -0.000694 -0.976970 details: Kazakhstan_Kumsay_EBA China_Tianyuan 0.002260 2.753796 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.324860 dscore: China_Tianyuan f4: 0.000438 Z: 0.641985 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000218 -0.367026 details: Russia_MBA_Poltavka Karitiana.DG 0.001603 2.997059 details: Kazakhstan_Kumsay_EBA Karitiana.DG 0.007087 11.337559 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002223 2.914646 dscore: Karitiana.DG f4: 0.000129 Z: 0.252363 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000141 -0.223366 details: Russia_MBA_Poltavka Russia_Ust_Ishim_HG.DG 0.000489 0.858384 details: Kazakhstan_Kumsay_EBA Russia_Ust_Ishim_HG.DG 0.000668 1.019907 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003225 3.886983 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000382 Z: 0.694154 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000499 0.953229 details: Russia_MBA_Poltavka Dai.DG -0.001279 -2.829367 details: Kazakhstan_Kumsay_EBA Dai.DG 0.001316 2.512698 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006394 9.365346 dscore: Dai.DG f4: 0.000065 Z: 0.144324 details: Iran_ShahrISokhta_BA2 Han.DG 0.000573 1.154643 details: Russia_MBA_Poltavka Han.DG -0.000976 -2.248961 details: Kazakhstan_Kumsay_EBA Han.DG 0.001785 3.566552 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006281 9.752993 dscore: Han.DG f4: 0.000193 Z: 0.452144 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000854 -1.117358 details: Russia_MBA_Poltavka Georgia_Kotias.SG 0.004107 6.060151 details: Kazakhstan_Kumsay_EBA Georgia_Kotias.SG 0.002789 3.375439 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007934 -8.028838 dscore: Georgia_Kotias.SG f4: 0.000570 Z: 0.873645 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000359 -0.486338 details: Russia_MBA_Poltavka Russia_Kostenki14.SG 0.003657 5.241783 details: Kazakhstan_Kumsay_EBA Russia_Kostenki14.SG 0.004331 5.481176 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003005 -3.161035 dscore: Russia_Kostenki14.SG f4: 0.000885 Z: 1.360346 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001207 2.181294 details: Russia_MBA_Poltavka Iran_GanjDareh_N 0.001068 2.136573 details: Kazakhstan_Kumsay_EBA Iran_GanjDareh_N 0.001291 2.308181 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009096 -11.983312 dscore: Iran_GanjDareh_N f4: 0.000215 Z: 0.448787 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001802 -3.493557 details: Russia_MBA_Poltavka Turkey_N 0.004047 9.113586 details: Kazakhstan_Kumsay_EBA Turkey_N 0.001082 2.073725 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007431 -11.493733 dscore: Turkey_N f4: 0.000265 Z: 0.604962 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002423 -3.041623 details: Russia_MBA_Poltavka Jordan_PPNB 0.002397 3.310258 details: Kazakhstan_Kumsay_EBA Jordan_PPNB 0.000029 0.034635 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008304 -7.867370 dscore: Jordan_PPNB f4: -0.000838 Z: -1.180443 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003887 -5.389724 details: Russia_MBA_Poltavka Luxembourg_Loschbour.DG 0.006418 9.666369 details: Kazakhstan_Kumsay_EBA Luxembourg_Loschbour.DG 0.003683 4.896646 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006208 -6.824114 dscore: Luxembourg_Loschbour.DG f4: 0.000169 Z: 0.266651 gendstat: Mbuti.DG Yoruba.DG -0.408 gendstat: Mbuti.DG Papuan.DG 1.273 gendstat: Mbuti.DG China_Tianyuan 0.642 gendstat: Mbuti.DG Karitiana.DG 0.252 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.694 gendstat: Mbuti.DG Dai.DG 0.144 gendstat: Mbuti.DG Han.DG 0.452 gendstat: Mbuti.DG Georgia_Kotias.SG 0.874 gendstat: Mbuti.DG Russia_Kostenki14.SG 1.360 gendstat: Mbuti.DG Iran_GanjDareh_N 0.449 gendstat: Mbuti.DG Turkey_N 0.605 gendstat: Mbuti.DG Jordan_PPNB -1.180 gendstat: Mbuti.DG Luxembourg_Loschbour.DG 0.267 gendstat: Yoruba.DG Papuan.DG 1.552 gendstat: Yoruba.DG China_Tianyuan 0.813 gendstat: Yoruba.DG Karitiana.DG 0.452 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 0.903 gendstat: Yoruba.DG Dai.DG 0.385 gendstat: Yoruba.DG Han.DG 0.733 gendstat: Yoruba.DG Georgia_Kotias.SG 1.063 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.572 gendstat: Yoruba.DG Iran_GanjDareh_N 0.680 gendstat: Yoruba.DG Turkey_N 0.917 gendstat: Yoruba.DG Jordan_PPNB -1.097 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.437 gendstat: Papuan.DG China_Tianyuan -0.235 gendstat: Papuan.DG Karitiana.DG -0.980 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.362 gendstat: Papuan.DG Dai.DG -1.308 gendstat: Papuan.DG Han.DG -1.053 gendstat: Papuan.DG Georgia_Kotias.SG -0.039 gendstat: Papuan.DG Russia_Kostenki14.SG 0.419 gendstat: Papuan.DG Iran_GanjDareh_N -0.698 gendstat: Papuan.DG Turkey_N -0.686 gendstat: Papuan.DG Jordan_PPNB -1.890 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.658 gendstat: China_Tianyuan Karitiana.DG -0.442 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.075 gendstat: China_Tianyuan Dai.DG -0.597 gendstat: China_Tianyuan Han.DG -0.405 gendstat: China_Tianyuan Georgia_Kotias.SG 0.157 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.531 gendstat: China_Tianyuan Iran_GanjDareh_N -0.300 gendstat: China_Tianyuan Turkey_N -0.247 gendstat: China_Tianyuan Jordan_PPNB -1.371 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.329 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.418 gendstat: Karitiana.DG Dai.DG -0.164 gendstat: Karitiana.DG Han.DG 0.176 gendstat: Karitiana.DG Georgia_Kotias.SG 0.639 gendstat: Karitiana.DG Russia_Kostenki14.SG 1.089 gendstat: Karitiana.DG Iran_GanjDareh_N 0.160 gendstat: Karitiana.DG Turkey_N 0.276 gendstat: Karitiana.DG Jordan_PPNB -1.283 gendstat: Karitiana.DG Luxembourg_Loschbour.DG 0.064 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.593 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.360 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.255 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.671 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.277 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.219 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -1.604 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.309 gendstat: Dai.DG Han.DG 0.819 gendstat: Dai.DG Georgia_Kotias.SG 0.779 gendstat: Dai.DG Russia_Kostenki14.SG 1.229 gendstat: Dai.DG Iran_GanjDareh_N 0.302 gendstat: Dai.DG Turkey_N 0.463 gendstat: Dai.DG Jordan_PPNB -1.261 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.171 gendstat: Han.DG Georgia_Kotias.SG 0.589 gendstat: Han.DG Russia_Kostenki14.SG 1.060 gendstat: Han.DG Iran_GanjDareh_N 0.045 gendstat: Han.DG Turkey_N 0.174 gendstat: Han.DG Jordan_PPNB -1.449 gendstat: Han.DG Luxembourg_Loschbour.DG -0.040 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.404 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.576 gendstat: Georgia_Kotias.SG Turkey_N -0.537 gendstat: Georgia_Kotias.SG Jordan_PPNB -1.743 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.554 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.983 gendstat: Russia_Kostenki14.SG Turkey_N -0.988 gendstat: Russia_Kostenki14.SG Jordan_PPNB -2.071 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -0.983 gendstat: Iran_GanjDareh_N Turkey_N 0.122 gendstat: Iran_GanjDareh_N Jordan_PPNB -1.508 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.075 gendstat: Turkey_N Jordan_PPNB -1.813 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.185 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 1.304 ##end of qpAdm: 19.249 seconds cpu 1.483 Mbytes in use