qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 66527425 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_MBA_Poltavka Mongolia_EIA_SlabGrave_1 Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 10 chisq: 15.234 tail: 0.123768704 dofdiff: 12 chisqdiff: -15.234 taildiff: 1 B: scale 1.000 1.000 1.000 Yoruba.DG 0.013 -0.046 0.334 Papuan.DG 0.721 -0.882 0.996 China_Tianyuan 0.933 0.169 -0.135 Karitiana.DG 1.086 1.774 -0.520 Russia_Ust_Ishim_HG.DG 0.210 -0.228 0.983 Dai.DG 1.654 1.082 -0.691 Han.DG 1.804 1.426 -0.947 Georgia_Kotias.SG -1.019 0.860 -0.116 Russia_Kostenki14.SG -0.449 0.723 0.401 Iran_GanjDareh_N -0.909 0.267 -2.189 Turkey_N -0.906 1.031 0.290 Jordan_PPNB -0.825 0.896 -0.082 Luxembourg_Loschbour.DG -0.911 1.608 2.051 A: scale 186.236 595.766 1128.464 Iran_ShahrISokhta_BA2 0.104 -0.650 -0.952 Russia_MBA_Poltavka -0.344 1.057 0.808 Mongolia_EIA_SlabGrave_1 1.633 0.846 -0.023 Indian_GreatAndaman_100BP.SG 1.098 -1.321 1.562 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 15.234 taildiff: 0.123768704 B: scale 662.965 356.409 107.628 160.675 Yoruba.DG -0.228 0.041 0.007 0.061 Papuan.DG 0.739 -0.473 0.627 1.255 China_Tianyuan 0.674 -0.247 1.014 0.870 Karitiana.DG -0.144 0.571 1.395 0.357 Russia_Ust_Ishim_HG.DG -0.094 0.174 0.218 0.518 Dai.DG 0.331 -0.456 1.777 1.027 Han.DG 0.380 -0.348 1.983 1.009 Georgia_Kotias.SG -0.566 1.464 -0.746 -1.275 Russia_Kostenki14.SG -0.238 1.303 -0.203 -0.483 Iran_GanjDareh_N 0.800 0.381 -0.768 -1.461 Turkey_N -1.194 1.442 -0.671 -1.194 Jordan_PPNB -1.607 0.854 -0.719 -1.334 Luxembourg_Loschbour.DG -2.577 2.287 -0.585 -0.998 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_MBA_Poltavka 0.000 2.000 0.000 0.000 Mongolia_EIA_SlabGrave_1 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: 0.498 0.417 -0.002 0.087 totmean: 0.498 0.417 -0.002 0.087 boot mean: 0.498 0.417 -0.002 0.087 std. errors: 0.063 0.043 0.022 0.042 error covariance (* 1,000,000) 3936 -2392 119 -1662 -2392 1808 38 546 119 38 495 -652 -1662 546 -652 1768 summ: Sohi 4 0.123769 0.498 0.417 -0.002 0.087 3936 -2392 119 -1662 1808 ... 38 546 495 -652 1768 fixed pat wt dof chisq tail prob 0000 0 10 15.234 0.123769 0.498 0.417 -0.002 0.087 infeasible 0001 1 11 18.430 0.0721177 0.581 0.390 0.029 0.000 0010 1 11 16.539 0.12228 0.494 0.420 0.000 0.086 0100 1 11 84.397 2.0706e-13 1.063 0.000 -0.014 -0.049 infeasible 1000 1 11 80.142 1.38534e-12 0.000 0.721 -0.032 0.311 infeasible 0011 2 12 22.668 0.0306794 0.631 0.369 0.000 0.000 0101 2 12 87.946 1.23197e-13 1.033 0.000 -0.033 0.000 infeasible 0110 2 12 88.691 8.84649e-14 1.071 0.000 0.000 -0.071 infeasible 1001 2 12 167.909 1.27761e-29 0.000 0.854 0.146 0.000 1010 2 12 80.719 3.00949e-12 0.000 0.728 0.000 0.272 1100 2 12 473.413 0 0.000 0.000 -0.869 1.869 infeasible 0111 3 13 91.043 8.82644e-14 1.000 0.000 0.000 0.000 1011 3 13 276.873 0 0.000 1.000 0.000 0.000 1101 3 13 2628.194 0 0.000 0.000 1.000 0.000 1110 3 13 782.568 0 0.000 0.000 0.000 1.000 best pat: 0000 0.123769 - - best pat: 0010 0.12228 chi(nested): 1.305 p-value for nested model: 0.253311 best pat: 1010 3.00949e-12 chi(nested): 64.180 p-value for nested model: 1.13553e-15 best pat: 0111 8.82644e-14 not nested coeffs: 0.498 0.417 -0.002 0.087 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000345 -1.312923 details: Russia_MBA_Poltavka Yoruba.DG 0.000115 0.496158 details: Mongolia_EIA_SlabGrave_1 Yoruba.DG 0.000066 0.276553 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000382 1.183513 dscore: Yoruba.DG f4: -0.000090 Z: -0.408169 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001115 2.076381 details: Russia_MBA_Poltavka Papuan.DG -0.001327 -2.682021 details: Mongolia_EIA_SlabGrave_1 Papuan.DG 0.005828 10.986894 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007809 10.881474 dscore: Papuan.DG f4: 0.000669 Z: 1.447672 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001016 1.299368 details: Russia_MBA_Poltavka China_Tianyuan -0.000694 -0.976970 details: Mongolia_EIA_SlabGrave_1 China_Tianyuan 0.009424 12.235473 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.324860 dscore: China_Tianyuan f4: 0.000667 Z: 0.993184 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000218 -0.367026 details: Russia_MBA_Poltavka Karitiana.DG 0.001603 2.997059 details: Mongolia_EIA_SlabGrave_1 Karitiana.DG 0.012960 21.969658 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002223 2.914646 dscore: Karitiana.DG f4: 0.000724 Z: 1.437721 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000141 -0.223366 details: Russia_MBA_Poltavka Russia_Ust_Ishim_HG.DG 0.000489 0.858384 details: Mongolia_EIA_SlabGrave_1 Russia_Ust_Ishim_HG.DG 0.002022 3.175729 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003225 3.886983 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000411 Z: 0.759611 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000499 0.953229 details: Russia_MBA_Poltavka Dai.DG -0.001279 -2.829367 details: Mongolia_EIA_SlabGrave_1 Dai.DG 0.016510 31.986658 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006394 9.365346 dscore: Dai.DG f4: 0.000234 Z: 0.525512 details: Iran_ShahrISokhta_BA2 Han.DG 0.000573 1.154643 details: Russia_MBA_Poltavka Han.DG -0.000976 -2.248961 details: Mongolia_EIA_SlabGrave_1 Han.DG 0.018421 37.017125 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006281 9.752993 dscore: Han.DG f4: 0.000382 Z: 0.908502 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000854 -1.117358 details: Russia_MBA_Poltavka Georgia_Kotias.SG 0.004107 6.060151 details: Mongolia_EIA_SlabGrave_1 Georgia_Kotias.SG -0.006929 -9.216876 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007934 -8.028838 dscore: Georgia_Kotias.SG f4: 0.000612 Z: 0.950339 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000359 -0.486338 details: Russia_MBA_Poltavka Russia_Kostenki14.SG 0.003657 5.241783 details: Mongolia_EIA_SlabGrave_1 Russia_Kostenki14.SG -0.001887 -2.619262 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003005 -3.161035 dscore: Russia_Kostenki14.SG f4: 0.001089 Z: 1.700803 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001207 2.181294 details: Russia_MBA_Poltavka Iran_GanjDareh_N 0.001068 2.136573 details: Mongolia_EIA_SlabGrave_1 Iran_GanjDareh_N -0.007132 -12.782290 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009096 -11.983312 dscore: Iran_GanjDareh_N f4: 0.000269 Z: 0.570245 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001802 -3.493557 details: Russia_MBA_Poltavka Turkey_N 0.004047 9.113586 details: Mongolia_EIA_SlabGrave_1 Turkey_N -0.006238 -13.062534 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007431 -11.493733 dscore: Turkey_N f4: 0.000158 Z: 0.364104 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002423 -3.041623 details: Russia_MBA_Poltavka Jordan_PPNB 0.002397 3.310258 details: Mongolia_EIA_SlabGrave_1 Jordan_PPNB -0.006682 -8.645430 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008304 -7.867370 dscore: Jordan_PPNB f4: -0.000915 Z: -1.319445 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003887 -5.389724 details: Russia_MBA_Poltavka Luxembourg_Loschbour.DG 0.006418 9.666369 details: Mongolia_EIA_SlabGrave_1 Luxembourg_Loschbour.DG -0.005433 -8.197310 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006208 -6.824114 dscore: Luxembourg_Loschbour.DG f4: 0.000214 Z: 0.341750 gendstat: Mbuti.DG Yoruba.DG -0.408 gendstat: Mbuti.DG Papuan.DG 1.448 gendstat: Mbuti.DG China_Tianyuan 0.993 gendstat: Mbuti.DG Karitiana.DG 1.438 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.760 gendstat: Mbuti.DG Dai.DG 0.526 gendstat: Mbuti.DG Han.DG 0.909 gendstat: Mbuti.DG Georgia_Kotias.SG 0.950 gendstat: Mbuti.DG Russia_Kostenki14.SG 1.701 gendstat: Mbuti.DG Iran_GanjDareh_N 0.570 gendstat: Mbuti.DG Turkey_N 0.364 gendstat: Mbuti.DG Jordan_PPNB -1.319 gendstat: Mbuti.DG Luxembourg_Loschbour.DG 0.342 gendstat: Yoruba.DG Papuan.DG 1.736 gendstat: Yoruba.DG China_Tianyuan 1.184 gendstat: Yoruba.DG Karitiana.DG 1.697 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 0.974 gendstat: Yoruba.DG Dai.DG 0.810 gendstat: Yoruba.DG Han.DG 1.239 gendstat: Yoruba.DG Georgia_Kotias.SG 1.146 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.932 gendstat: Yoruba.DG Iran_GanjDareh_N 0.814 gendstat: Yoruba.DG Turkey_N 0.646 gendstat: Yoruba.DG Jordan_PPNB -1.244 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.517 gendstat: Papuan.DG China_Tianyuan -0.004 gendstat: Papuan.DG Karitiana.DG 0.115 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.444 gendstat: Papuan.DG Dai.DG -1.082 gendstat: Papuan.DG Han.DG -0.755 gendstat: Papuan.DG Georgia_Kotias.SG -0.084 gendstat: Papuan.DG Russia_Kostenki14.SG 0.619 gendstat: Papuan.DG Iran_GanjDareh_N -0.739 gendstat: Papuan.DG Turkey_N -1.067 gendstat: Papuan.DG Jordan_PPNB -2.121 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.712 gendstat: China_Tianyuan Karitiana.DG 0.083 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.347 gendstat: China_Tianyuan Dai.DG -0.712 gendstat: China_Tianyuan Han.DG -0.483 gendstat: China_Tianyuan Georgia_Kotias.SG -0.066 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.512 gendstat: China_Tianyuan Iran_GanjDareh_N -0.545 gendstat: China_Tianyuan Turkey_N -0.740 gendstat: China_Tianyuan Jordan_PPNB -1.742 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.565 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.527 gendstat: Karitiana.DG Dai.DG -1.275 gendstat: Karitiana.DG Han.DG -0.953 gendstat: Karitiana.DG Georgia_Kotias.SG -0.164 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.539 gendstat: Karitiana.DG Iran_GanjDareh_N -0.855 gendstat: Karitiana.DG Turkey_N -1.164 gendstat: Karitiana.DG Jordan_PPNB -2.223 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.822 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.337 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.056 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.278 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.923 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.241 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.481 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -1.779 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.290 gendstat: Dai.DG Han.DG 0.974 gendstat: Dai.DG Georgia_Kotias.SG 0.592 gendstat: Dai.DG Russia_Kostenki14.SG 1.311 gendstat: Dai.DG Iran_GanjDareh_N 0.072 gendstat: Dai.DG Turkey_N -0.177 gendstat: Dai.DG Jordan_PPNB -1.641 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.032 gendstat: Han.DG Georgia_Kotias.SG 0.366 gendstat: Han.DG Russia_Kostenki14.SG 1.107 gendstat: Han.DG Iran_GanjDareh_N -0.234 gendstat: Han.DG Turkey_N -0.545 gendstat: Han.DG Jordan_PPNB -1.865 gendstat: Han.DG Luxembourg_Loschbour.DG -0.282 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.621 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.569 gendstat: Georgia_Kotias.SG Turkey_N -0.818 gendstat: Georgia_Kotias.SG Jordan_PPNB -1.929 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.561 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -1.228 gendstat: Russia_Kostenki14.SG Turkey_N -1.511 gendstat: Russia_Kostenki14.SG Jordan_PPNB -2.468 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.224 gendstat: Iran_GanjDareh_N Turkey_N -0.277 gendstat: Iran_GanjDareh_N Jordan_PPNB -1.733 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.090 gendstat: Turkey_N Jordan_PPNB -1.807 gendstat: Turkey_N Luxembourg_Loschbour.DG 0.111 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 1.500 ##end of qpAdm: 19.519 seconds cpu 1.483 Mbytes in use