qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 64590287 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_MBA_Poltavka Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 11 chisq: 12.094 tail: 0.356642491 dofdiff: 13 chisqdiff: -12.094 taildiff: 1 B: scale 1.000 1.000 Yoruba.DG -0.038 0.228 Papuan.DG -1.100 0.451 China_Tianyuan -0.713 0.194 Karitiana.DG -0.093 0.868 Russia_Ust_Ishim_HG.DG -0.358 0.760 Dai.DG -0.902 0.459 Han.DG -0.867 0.512 Georgia_Kotias.SG 1.423 0.076 Russia_Kostenki14.SG 0.763 0.649 Iran_GanjDareh_N 1.292 -1.979 Turkey_N 1.341 0.577 Jordan_PPNB 1.255 0.174 Luxembourg_Loschbour.DG 1.389 2.490 A: scale 260.993 955.037 Iran_ShahrISokhta_BA2 -0.248 -1.051 Russia_MBA_Poltavka 0.605 1.123 Indian_GreatAndaman_100BP.SG -1.604 0.796 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 12.094 taildiff: 0.356642491 B: scale 662.965 356.409 160.675 Yoruba.DG -0.228 0.041 0.061 Papuan.DG 0.739 -0.473 1.255 China_Tianyuan 0.674 -0.247 0.870 Karitiana.DG -0.144 0.571 0.357 Russia_Ust_Ishim_HG.DG -0.094 0.174 0.518 Dai.DG 0.331 -0.456 1.027 Han.DG 0.380 -0.348 1.009 Georgia_Kotias.SG -0.566 1.464 -1.275 Russia_Kostenki14.SG -0.238 1.303 -0.483 Iran_GanjDareh_N 0.800 0.381 -1.461 Turkey_N -1.194 1.442 -1.194 Jordan_PPNB -1.607 0.854 -1.334 Luxembourg_Loschbour.DG -2.577 2.287 -0.998 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Russia_MBA_Poltavka 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.505 0.416 0.079 totmean: 0.505 0.416 0.079 boot mean: 0.505 0.416 0.079 std. errors: 0.063 0.043 0.030 error covariance (* 1,000,000) 3917 -2450 -1468 -2450 1881 568 -1468 568 899 summ: Sohi 3 0.356642 0.505 0.416 0.079 3917 -2450 -1468 1881 568 ... 899 fixed pat wt dof chisq tail prob 000 0 11 12.094 0.356642 0.505 0.416 0.079 001 1 12 19.013 0.0882199 0.632 0.368 0.000 010 1 12 84.745 5.09435e-13 1.074 0.000 -0.074 infeasible 100 1 12 78.373 8.42593e-12 0.000 0.728 0.272 011 2 13 89.089 2.087e-13 1.000 0.000 0.000 101 2 13 271.547 0 0.000 1.000 0.000 110 2 13 782.195 0 0.000 0.000 1.000 best pat: 000 0.356642 - - best pat: 100 8.42593e-12 chi(nested): 66.279 p-value for nested model: 3.91404e-16 best pat: 011 2.087e-13 not nested coeffs: 0.505 0.416 0.079 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000345 -1.312923 details: Russia_MBA_Poltavka Yoruba.DG 0.000115 0.496158 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000382 1.183513 dscore: Yoruba.DG f4: -0.000096 Z: -0.432777 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001115 2.076381 details: Russia_MBA_Poltavka Papuan.DG -0.001327 -2.682021 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007809 10.881474 dscore: Papuan.DG f4: 0.000626 Z: 1.354206 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001016 1.299368 details: Russia_MBA_Poltavka China_Tianyuan -0.000694 -0.976970 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.324860 dscore: China_Tianyuan f4: 0.000651 Z: 0.969854 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000218 -0.367026 details: Russia_MBA_Poltavka Karitiana.DG 0.001603 2.997059 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002223 2.914646 dscore: Karitiana.DG f4: 0.000733 Z: 1.455603 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000141 -0.223366 details: Russia_MBA_Poltavka Russia_Ust_Ishim_HG.DG 0.000489 0.858384 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003225 3.886983 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000387 Z: 0.714895 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000499 0.953229 details: Russia_MBA_Poltavka Dai.DG -0.001279 -2.829367 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006394 9.365346 dscore: Dai.DG f4: 0.000224 Z: 0.503549 details: Iran_ShahrISokhta_BA2 Han.DG 0.000573 1.154643 details: Russia_MBA_Poltavka Han.DG -0.000976 -2.248961 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006281 9.752993 dscore: Han.DG f4: 0.000378 Z: 0.898813 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000854 -1.117358 details: Russia_MBA_Poltavka Georgia_Kotias.SG 0.004107 6.060151 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007934 -8.028838 dscore: Georgia_Kotias.SG f4: 0.000653 Z: 1.013334 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000359 -0.486338 details: Russia_MBA_Poltavka Russia_Kostenki14.SG 0.003657 5.241783 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003005 -3.161035 dscore: Russia_Kostenki14.SG f4: 0.001104 Z: 1.723043 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001207 2.181294 details: Russia_MBA_Poltavka Iran_GanjDareh_N 0.001068 2.136573 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009096 -11.983312 dscore: Iran_GanjDareh_N f4: 0.000336 Z: 0.712760 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001802 -3.493557 details: Russia_MBA_Poltavka Turkey_N 0.004047 9.113586 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007431 -11.493733 dscore: Turkey_N f4: 0.000190 Z: 0.436970 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002423 -3.041623 details: Russia_MBA_Poltavka Jordan_PPNB 0.002397 3.310258 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008304 -7.867370 dscore: Jordan_PPNB f4: -0.000880 Z: -1.268729 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003887 -5.389724 details: Russia_MBA_Poltavka Luxembourg_Loschbour.DG 0.006418 9.666369 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006208 -6.824114 dscore: Luxembourg_Loschbour.DG f4: 0.000221 Z: 0.352595 gendstat: Mbuti.DG Yoruba.DG -0.433 gendstat: Mbuti.DG Papuan.DG 1.354 gendstat: Mbuti.DG China_Tianyuan 0.970 gendstat: Mbuti.DG Karitiana.DG 1.456 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.715 gendstat: Mbuti.DG Dai.DG 0.504 gendstat: Mbuti.DG Han.DG 0.899 gendstat: Mbuti.DG Georgia_Kotias.SG 1.013 gendstat: Mbuti.DG Russia_Kostenki14.SG 1.723 gendstat: Mbuti.DG Iran_GanjDareh_N 0.713 gendstat: Mbuti.DG Turkey_N 0.437 gendstat: Mbuti.DG Jordan_PPNB -1.269 gendstat: Mbuti.DG Luxembourg_Loschbour.DG 0.353 gendstat: Yoruba.DG Papuan.DG 1.650 gendstat: Yoruba.DG China_Tianyuan 1.169 gendstat: Yoruba.DG Karitiana.DG 1.727 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 0.937 gendstat: Yoruba.DG Dai.DG 0.800 gendstat: Yoruba.DG Han.DG 1.243 gendstat: Yoruba.DG Georgia_Kotias.SG 1.221 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.964 gendstat: Yoruba.DG Iran_GanjDareh_N 0.978 gendstat: Yoruba.DG Turkey_N 0.743 gendstat: Yoruba.DG Jordan_PPNB -1.182 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.538 gendstat: Papuan.DG China_Tianyuan 0.038 gendstat: Papuan.DG Karitiana.DG 0.226 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.410 gendstat: Papuan.DG Dai.DG -0.999 gendstat: Papuan.DG Han.DG -0.652 gendstat: Papuan.DG Georgia_Kotias.SG 0.040 gendstat: Papuan.DG Russia_Kostenki14.SG 0.704 gendstat: Papuan.DG Iran_GanjDareh_N -0.535 gendstat: Papuan.DG Turkey_N -0.910 gendstat: Papuan.DG Jordan_PPNB -2.015 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.633 gendstat: China_Tianyuan Karitiana.DG 0.120 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.358 gendstat: China_Tianyuan Dai.DG -0.702 gendstat: China_Tianyuan Han.DG -0.463 gendstat: China_Tianyuan Georgia_Kotias.SG 0.002 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.549 gendstat: China_Tianyuan Iran_GanjDareh_N -0.432 gendstat: China_Tianyuan Turkey_N -0.671 gendstat: China_Tianyuan Jordan_PPNB -1.686 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.537 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.582 gendstat: Karitiana.DG Dai.DG -1.325 gendstat: Karitiana.DG Han.DG -0.989 gendstat: Karitiana.DG Georgia_Kotias.SG -0.118 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.546 gendstat: Karitiana.DG Iran_GanjDareh_N -0.747 gendstat: Karitiana.DG Turkey_N -1.117 gendstat: Karitiana.DG Jordan_PPNB -2.187 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.826 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.310 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.017 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.367 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.975 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.086 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.375 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -1.698 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.245 gendstat: Dai.DG Han.DG 1.011 gendstat: Dai.DG Georgia_Kotias.SG 0.670 gendstat: Dai.DG Russia_Kostenki14.SG 1.348 gendstat: Dai.DG Iran_GanjDareh_N 0.228 gendstat: Dai.DG Turkey_N -0.080 gendstat: Dai.DG Jordan_PPNB -1.577 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.005 gendstat: Han.DG Georgia_Kotias.SG 0.436 gendstat: Han.DG Russia_Kostenki14.SG 1.136 gendstat: Han.DG Iran_GanjDareh_N -0.087 gendstat: Han.DG Turkey_N -0.458 gendstat: Han.DG Jordan_PPNB -1.809 gendstat: Han.DG Luxembourg_Loschbour.DG -0.264 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.587 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.525 gendstat: Georgia_Kotias.SG Turkey_N -0.834 gendstat: Georgia_Kotias.SG Jordan_PPNB -1.935 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.608 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -1.150 gendstat: Russia_Kostenki14.SG Turkey_N -1.482 gendstat: Russia_Kostenki14.SG Jordan_PPNB -2.441 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.235 gendstat: Iran_GanjDareh_N Turkey_N -0.365 gendstat: Iran_GanjDareh_N Jordan_PPNB -1.778 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.190 gendstat: Turkey_N Jordan_PPNB -1.800 gendstat: Turkey_N Luxembourg_Loschbour.DG 0.062 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 1.461 ##end of qpAdm: 7.430 seconds cpu 1.110 Mbytes in use