qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 57097833 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Samara_EBA_Yamnaya Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 11 chisq: 15.958 tail: 0.142680722 dofdiff: 13 chisqdiff: -15.958 taildiff: 1 B: scale 1.000 1.000 Yoruba.DG -0.049 0.157 Papuan.DG -1.123 0.388 China_Tianyuan -0.669 0.268 Karitiana.DG -0.035 0.977 Russia_Ust_Ishim_HG.DG -0.367 0.691 Dai.DG -0.894 0.429 Han.DG -0.859 0.486 Georgia_Kotias.SG 1.502 0.255 Russia_Kostenki14.SG 0.735 0.571 Iran_GanjDareh_N 1.297 -2.022 Turkey_N 1.331 0.478 Jordan_PPNB 1.185 -0.008 Luxembourg_Loschbour.DG 1.400 2.489 A: scale 261.426 1002.127 Iran_ShahrISokhta_BA2 -0.240 -1.060 Russia_Samara_EBA_Yamnaya 0.633 1.050 Indian_GreatAndaman_100BP.SG -1.594 0.881 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 15.958 taildiff: 0.142680722 B: scale 672.859 351.029 161.088 Yoruba.DG -0.225 -0.028 0.058 Papuan.DG 0.757 -0.597 1.255 China_Tianyuan 0.719 -0.203 0.872 Karitiana.DG -0.106 0.651 0.351 Russia_Ust_Ishim_HG.DG -0.053 0.084 0.521 Dai.DG 0.369 -0.489 1.027 Han.DG 0.420 -0.383 1.009 Georgia_Kotias.SG -0.538 1.700 -1.277 Russia_Kostenki14.SG -0.215 1.189 -0.484 Iran_GanjDareh_N 0.860 0.526 -1.468 Turkey_N -1.166 1.367 -1.197 Jordan_PPNB -1.584 0.716 -1.321 Luxembourg_Loschbour.DG -2.567 2.196 -0.997 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Russia_Samara_EBA_Yamnaya 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.490 0.418 0.092 totmean: 0.490 0.418 0.092 boot mean: 0.491 0.417 0.092 std. errors: 0.064 0.044 0.030 error covariance (* 1,000,000) 4148 -2590 -1558 -2590 1953 637 -1558 637 921 summ: Sohi 3 0.142681 0.491 0.417 0.092 4148 -2590 -1558 1953 637 ... 921 fixed pat wt dof chisq tail prob 000 0 11 15.958 0.142681 0.490 0.418 0.092 001 1 12 25.064 0.0145225 0.647 0.353 0.000 010 1 12 84.435 5.84344e-13 1.072 0.000 -0.072 infeasible 100 1 12 78.031 9.78574e-12 0.000 0.719 0.281 011 2 13 88.260 3.00392e-13 1.000 0.000 0.000 101 2 13 301.040 0 0.000 1.000 0.000 110 2 13 783.938 0 0.000 0.000 1.000 best pat: 000 0.142681 - - best pat: 100 9.78574e-12 chi(nested): 62.073 p-value for nested model: 3.31036e-15 best pat: 011 3.00392e-13 not nested coeffs: 0.490 0.418 0.092 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000334 -1.270060 details: Russia_Samara_EBA_Yamnaya Yoruba.DG -0.000081 -0.361929 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000360 1.119658 dscore: Yoruba.DG f4: -0.000164 Z: -0.751368 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001125 2.097453 details: Russia_Samara_EBA_Yamnaya Papuan.DG -0.001702 -3.583431 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007791 10.902990 dscore: Papuan.DG f4: 0.000559 Z: 1.229633 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001068 1.365551 details: Russia_Samara_EBA_Yamnaya China_Tianyuan -0.000577 -0.840080 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.339075 dscore: China_Tianyuan f4: 0.000782 Z: 1.177408 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000158 -0.267138 details: Russia_Samara_EBA_Yamnaya Karitiana.DG 0.001854 3.590080 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002181 2.861997 dscore: Karitiana.DG f4: 0.000897 Z: 1.801865 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000079 -0.124028 details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim_HG.DG 0.000240 0.427742 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003232 3.914230 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000359 Z: 0.672574 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000549 1.050750 details: Russia_Samara_EBA_Yamnaya Dai.DG -0.001394 -3.192223 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006373 9.354594 dscore: Dai.DG f4: 0.000275 Z: 0.630830 details: Iran_ShahrISokhta_BA2 Han.DG 0.000624 1.260771 details: Russia_Samara_EBA_Yamnaya Han.DG -0.001092 -2.585869 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006264 9.746472 dscore: Han.DG f4: 0.000427 Z: 1.032290 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000800 -1.043358 details: Russia_Samara_EBA_Yamnaya Georgia_Kotias.SG 0.004842 7.044636 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007927 -8.024587 dscore: Georgia_Kotias.SG f4: 0.000899 Z: 1.377048 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000320 -0.432656 details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.003388 4.931484 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003006 -3.168085 dscore: Russia_Kostenki14.SG f4: 0.000981 Z: 1.536146 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001278 2.306034 details: Russia_Samara_EBA_Yamnaya Iran_GanjDareh_N 0.001500 3.130020 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009113 -12.001885 dscore: Iran_GanjDareh_N f4: 0.000413 Z: 0.887350 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001733 -3.362566 details: Russia_Samara_EBA_Yamnaya Turkey_N 0.003896 8.924058 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007432 -11.510838 dscore: Turkey_N f4: 0.000092 Z: 0.214079 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002354 -2.954664 details: Russia_Samara_EBA_Yamnaya Jordan_PPNB 0.002040 2.899406 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008202 -7.785529 dscore: Jordan_PPNB f4: -0.001058 Z: -1.542369 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003816 -5.295356 details: Russia_Samara_EBA_Yamnaya Luxembourg_Loschbour.DG 0.006255 9.734961 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006191 -6.834554 dscore: Luxembourg_Loschbour.DG f4: 0.000171 Z: 0.278817 gendstat: Mbuti.DG Yoruba.DG -0.751 gendstat: Mbuti.DG Papuan.DG 1.230 gendstat: Mbuti.DG China_Tianyuan 1.177 gendstat: Mbuti.DG Karitiana.DG 1.802 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.673 gendstat: Mbuti.DG Dai.DG 0.631 gendstat: Mbuti.DG Han.DG 1.032 gendstat: Mbuti.DG Georgia_Kotias.SG 1.377 gendstat: Mbuti.DG Russia_Kostenki14.SG 1.536 gendstat: Mbuti.DG Iran_GanjDareh_N 0.887 gendstat: Mbuti.DG Turkey_N 0.214 gendstat: Mbuti.DG Jordan_PPNB -1.542 gendstat: Mbuti.DG Luxembourg_Loschbour.DG 0.279 gendstat: Yoruba.DG Papuan.DG 1.689 gendstat: Yoruba.DG China_Tianyuan 1.514 gendstat: Yoruba.DG Karitiana.DG 2.233 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 1.023 gendstat: Yoruba.DG Dai.DG 1.119 gendstat: Yoruba.DG Han.DG 1.581 gendstat: Yoruba.DG Georgia_Kotias.SG 1.713 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.873 gendstat: Yoruba.DG Iran_GanjDareh_N 1.329 gendstat: Yoruba.DG Turkey_N 0.668 gendstat: Yoruba.DG Jordan_PPNB -1.358 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.578 gendstat: Papuan.DG China_Tianyuan 0.346 gendstat: Papuan.DG Karitiana.DG 0.713 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.346 gendstat: Papuan.DG Dai.DG -0.714 gendstat: Papuan.DG Han.DG -0.350 gendstat: Papuan.DG Georgia_Kotias.SG 0.505 gendstat: Papuan.DG Russia_Kostenki14.SG 0.629 gendstat: Papuan.DG Iran_GanjDareh_N -0.275 gendstat: Papuan.DG Turkey_N -0.993 gendstat: Papuan.DG Jordan_PPNB -2.179 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.624 gendstat: China_Tianyuan Karitiana.DG 0.171 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.573 gendstat: China_Tianyuan Dai.DG -0.850 gendstat: China_Tianyuan Han.DG -0.612 gendstat: China_Tianyuan Georgia_Kotias.SG 0.143 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.242 gendstat: China_Tianyuan Iran_GanjDareh_N -0.513 gendstat: China_Tianyuan Turkey_N -1.017 gendstat: China_Tianyuan Jordan_PPNB -2.064 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.776 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.923 gendstat: Karitiana.DG Dai.DG -1.634 gendstat: Karitiana.DG Han.DG -1.319 gendstat: Karitiana.DG Georgia_Kotias.SG 0.003 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.126 gendstat: Karitiana.DG Iran_GanjDareh_N -0.927 gendstat: Karitiana.DG Turkey_N -1.688 gendstat: Karitiana.DG Jordan_PPNB -2.700 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -1.193 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.163 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.133 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.752 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.853 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N 0.091 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.511 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -1.937 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.282 gendstat: Dai.DG Han.DG 1.003 gendstat: Dai.DG Georgia_Kotias.SG 0.972 gendstat: Dai.DG Russia_Kostenki14.SG 1.096 gendstat: Dai.DG Iran_GanjDareh_N 0.286 gendstat: Dai.DG Turkey_N -0.431 gendstat: Dai.DG Jordan_PPNB -1.931 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.177 gendstat: Han.DG Georgia_Kotias.SG 0.750 gendstat: Han.DG Russia_Kostenki14.SG 0.875 gendstat: Han.DG Iran_GanjDareh_N -0.030 gendstat: Han.DG Turkey_N -0.825 gendstat: Han.DG Jordan_PPNB -2.174 gendstat: Han.DG Luxembourg_Loschbour.DG -0.442 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.106 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.800 gendstat: Georgia_Kotias.SG Turkey_N -1.447 gendstat: Georgia_Kotias.SG Jordan_PPNB -2.493 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -1.044 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.867 gendstat: Russia_Kostenki14.SG Turkey_N -1.473 gendstat: Russia_Kostenki14.SG Jordan_PPNB -2.553 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.156 gendstat: Iran_GanjDareh_N Turkey_N -0.799 gendstat: Iran_GanjDareh_N Jordan_PPNB -2.145 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.403 gendstat: Turkey_N Jordan_PPNB -1.959 gendstat: Turkey_N Luxembourg_Loschbour.DG 0.156 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 1.674 ##end of qpAdm: 7.123 seconds cpu 1.110 Mbytes in use