qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 52895454 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Srubnaya_Alakul.SG Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 11 chisq: 5.827 tail: 0.884639458 dofdiff: 13 chisqdiff: -5.827 taildiff: 1 B: scale 1.000 1.000 Yoruba.DG -0.037 0.208 Papuan.DG -1.147 0.328 China_Tianyuan -0.820 -0.040 Karitiana.DG -0.216 0.479 Russia_Ust_Ishim_HG.DG -0.385 0.591 Dai.DG -0.953 0.325 Han.DG -0.912 0.382 Georgia_Kotias.SG 1.239 -0.321 Russia_Kostenki14.SG 0.690 0.451 Iran_GanjDareh_N 1.090 -2.241 Turkey_N 1.373 0.660 Jordan_PPNB 1.357 0.481 Luxembourg_Loschbour.DG 1.466 2.454 A: scale 258.613 824.981 Iran_ShahrISokhta_BA2 -0.243 -0.829 Russia_Srubnaya_Alakul.SG 0.659 1.195 Indian_GreatAndaman_100BP.SG -1.583 0.940 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 5.827 taildiff: 0.884639458 B: scale 672.859 321.588 161.088 Yoruba.DG -0.225 0.040 0.058 Papuan.DG 0.757 -0.645 1.255 China_Tianyuan 0.719 -0.570 0.872 Karitiana.DG -0.106 0.153 0.351 Russia_Ust_Ishim_HG.DG -0.053 0.040 0.521 Dai.DG 0.369 -0.578 1.027 Han.DG 0.420 -0.475 1.009 Georgia_Kotias.SG -0.538 0.917 -1.277 Russia_Kostenki14.SG -0.215 1.042 -0.484 Iran_GanjDareh_N 0.860 -0.086 -1.468 Turkey_N -1.166 1.546 -1.197 Jordan_PPNB -1.584 1.257 -1.321 Luxembourg_Loschbour.DG -2.567 2.402 -0.997 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Russia_Srubnaya_Alakul.SG 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.583 0.358 0.059 totmean: 0.583 0.358 0.059 boot mean: 0.584 0.357 0.059 std. errors: 0.051 0.035 0.028 error covariance (* 1,000,000) 2640 -1550 -1090 -1550 1237 313 -1090 313 777 summ: Sohi 3 0.884639 0.584 0.357 0.059 2640 -1550 -1090 1237 313 ... 777 fixed pat wt dof chisq tail prob 000 0 11 5.827 0.884639 0.583 0.358 0.059 001 1 12 10.320 0.587891 0.668 0.332 0.000 010 1 12 83.840 7.60385e-13 1.073 0.000 -0.073 infeasible 100 1 12 129.383 8.20818e-22 0.000 0.685 0.315 011 2 13 88.197 3.08875e-13 1.000 0.000 0.000 101 2 13 401.883 0 0.000 1.000 0.000 110 2 13 783.889 0 0.000 0.000 1.000 best pat: 000 0.884639 - - best pat: 100 8.20818e-22 chi(nested): 123.556 p-value for nested model: 1.05384e-28 best pat: 011 3.08875e-13 not nested coeffs: 0.583 0.358 0.059 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000334 -1.270060 details: Russia_Srubnaya_Alakul.SG Yoruba.DG 0.000125 0.536402 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000360 1.119658 dscore: Yoruba.DG f4: -0.000129 Z: -0.568709 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001125 2.097453 details: Russia_Srubnaya_Alakul.SG Papuan.DG -0.002006 -4.010930 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007791 10.902990 dscore: Papuan.DG f4: 0.000400 Z: 0.848768 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001068 1.365551 details: Russia_Srubnaya_Alakul.SG China_Tianyuan -0.001773 -2.456939 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.339075 dscore: China_Tianyuan f4: 0.000309 Z: 0.451484 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000158 -0.267138 details: Russia_Srubnaya_Alakul.SG Karitiana.DG 0.000476 0.878414 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002181 2.861997 dscore: Karitiana.DG f4: 0.000207 Z: 0.398142 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000079 -0.124028 details: Russia_Srubnaya_Alakul.SG Russia_Ust_Ishim_HG.DG 0.000124 0.214720 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003232 3.914230 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000190 Z: 0.345332 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000549 1.050750 details: Russia_Srubnaya_Alakul.SG Dai.DG -0.001798 -3.939821 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006373 9.354594 dscore: Dai.DG f4: 0.000054 Z: 0.118766 details: Iran_ShahrISokhta_BA2 Han.DG 0.000624 1.260771 details: Russia_Srubnaya_Alakul.SG Han.DG -0.001477 -3.340823 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006264 9.746472 dscore: Han.DG f4: 0.000206 Z: 0.477777 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000800 -1.043358 details: Russia_Srubnaya_Alakul.SG Georgia_Kotias.SG 0.002851 4.276774 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007927 -8.024587 dscore: Georgia_Kotias.SG f4: 0.000084 Z: 0.128232 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000320 -0.432656 details: Russia_Srubnaya_Alakul.SG Russia_Kostenki14.SG 0.003240 4.651612 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003006 -3.168085 dscore: Russia_Kostenki14.SG f4: 0.000794 Z: 1.225266 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001278 2.306034 details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N -0.000266 -0.526319 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009113 -12.001885 dscore: Iran_GanjDareh_N f4: 0.000110 Z: 0.228750 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001733 -3.362566 details: Russia_Srubnaya_Alakul.SG Turkey_N 0.004807 10.656711 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007432 -11.510838 dscore: Turkey_N f4: 0.000269 Z: 0.605314 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002354 -2.954664 details: Russia_Srubnaya_Alakul.SG Jordan_PPNB 0.003910 5.269617 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008202 -7.785529 dscore: Jordan_PPNB f4: -0.000460 Z: -0.655397 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003816 -5.295356 details: Russia_Srubnaya_Alakul.SG Luxembourg_Loschbour.DG 0.007468 11.193705 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006191 -6.834554 dscore: Luxembourg_Loschbour.DG f4: 0.000080 Z: 0.125232 gendstat: Mbuti.DG Yoruba.DG -0.569 gendstat: Mbuti.DG Papuan.DG 0.849 gendstat: Mbuti.DG China_Tianyuan 0.451 gendstat: Mbuti.DG Karitiana.DG 0.398 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.345 gendstat: Mbuti.DG Dai.DG 0.119 gendstat: Mbuti.DG Han.DG 0.478 gendstat: Mbuti.DG Georgia_Kotias.SG 0.128 gendstat: Mbuti.DG Russia_Kostenki14.SG 1.225 gendstat: Mbuti.DG Iran_GanjDareh_N 0.229 gendstat: Mbuti.DG Turkey_N 0.605 gendstat: Mbuti.DG Jordan_PPNB -0.655 gendstat: Mbuti.DG Luxembourg_Loschbour.DG 0.125 gendstat: Yoruba.DG Papuan.DG 1.205 gendstat: Yoruba.DG China_Tianyuan 0.677 gendstat: Yoruba.DG Karitiana.DG 0.676 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 0.610 gendstat: Yoruba.DG Dai.DG 0.447 gendstat: Yoruba.DG Han.DG 0.861 gendstat: Yoruba.DG Georgia_Kotias.SG 0.341 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.483 gendstat: Yoruba.DG Iran_GanjDareh_N 0.534 gendstat: Yoruba.DG Turkey_N 1.015 gendstat: Yoruba.DG Jordan_PPNB -0.492 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.349 gendstat: Papuan.DG China_Tianyuan -0.136 gendstat: Papuan.DG Karitiana.DG -0.394 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.354 gendstat: Papuan.DG Dai.DG -0.855 gendstat: Papuan.DG Han.DG -0.502 gendstat: Papuan.DG Georgia_Kotias.SG -0.460 gendstat: Papuan.DG Russia_Kostenki14.SG 0.586 gendstat: Papuan.DG Iran_GanjDareh_N -0.530 gendstat: Papuan.DG Turkey_N -0.271 gendstat: Papuan.DG Jordan_PPNB -1.150 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.503 gendstat: China_Tianyuan Karitiana.DG -0.147 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.158 gendstat: China_Tianyuan Dai.DG -0.419 gendstat: China_Tianyuan Han.DG -0.174 gendstat: China_Tianyuan Georgia_Kotias.SG -0.267 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.575 gendstat: China_Tianyuan Iran_GanjDareh_N -0.266 gendstat: China_Tianyuan Turkey_N -0.057 gendstat: China_Tianyuan Jordan_PPNB -0.844 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.286 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.028 gendstat: Karitiana.DG Dai.DG -0.390 gendstat: Karitiana.DG Han.DG -0.002 gendstat: Karitiana.DG Georgia_Kotias.SG -0.179 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.870 gendstat: Karitiana.DG Iran_GanjDareh_N -0.179 gendstat: Karitiana.DG Turkey_N 0.127 gendstat: Karitiana.DG Jordan_PPNB -0.896 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.204 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.251 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.031 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG -0.145 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.810 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.132 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.149 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -0.864 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.159 gendstat: Dai.DG Han.DG 0.995 gendstat: Dai.DG Georgia_Kotias.SG 0.047 gendstat: Dai.DG Russia_Kostenki14.SG 1.123 gendstat: Dai.DG Iran_GanjDareh_N 0.115 gendstat: Dai.DG Turkey_N 0.498 gendstat: Dai.DG Jordan_PPNB -0.731 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.043 gendstat: Han.DG Georgia_Kotias.SG -0.191 gendstat: Han.DG Russia_Kostenki14.SG 0.916 gendstat: Han.DG Iran_GanjDareh_N -0.199 gendstat: Han.DG Turkey_N 0.151 gendstat: Han.DG Jordan_PPNB -0.954 gendstat: Han.DG Luxembourg_Loschbour.DG -0.212 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.916 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N 0.042 gendstat: Georgia_Kotias.SG Turkey_N 0.327 gendstat: Georgia_Kotias.SG Jordan_PPNB -0.686 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.006 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -1.031 gendstat: Russia_Kostenki14.SG Turkey_N -0.859 gendstat: Russia_Kostenki14.SG Jordan_PPNB -1.527 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.012 gendstat: Iran_GanjDareh_N Turkey_N 0.392 gendstat: Iran_GanjDareh_N Jordan_PPNB -0.817 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.050 gendstat: Turkey_N Jordan_PPNB -1.220 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.373 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 0.714 ##end of qpAdm: 7.157 seconds cpu 1.110 Mbytes in use