qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_23andme/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_23andme/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_23andme/right.txt details: YES ## qpAdm version: 1520 seed: 66618899 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_MBA_Poltavka Turkmenistan_Gonur_BA_1 Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 10 chisq: 10.908 tail: 0.364728191 dofdiff: 12 chisqdiff: -10.908 taildiff: 1 B: scale 1.000 1.000 1.000 Yoruba.DG 0.004 -0.011 1.658 Papuan.DG -1.160 0.421 0.008 China_Tianyuan -0.873 0.549 -1.096 Karitiana.DG -0.285 1.132 -1.128 Russia_Ust_Ishim_HG.DG -0.368 0.503 1.040 Dai.DG -0.986 0.436 0.160 Han.DG -0.950 0.489 0.154 Georgia_Kotias.SG 1.425 0.156 0.202 Russia_Kostenki14.SG 0.593 0.968 -1.009 Iran_GanjDareh_N 1.378 -1.461 -1.699 Turkey_N 1.339 0.462 1.557 Jordan_PPNB 1.235 0.231 0.510 Luxembourg_Loschbour.DG 1.096 2.682 -0.136 A: scale 289.062 797.416 4647.566 Iran_ShahrISokhta_BA2 -0.256 -0.883 -1.420 Russia_MBA_Poltavka 0.635 1.211 0.045 Turkmenistan_Gonur_BA_1 0.630 -1.306 0.840 Indian_GreatAndaman_100BP.SG -1.770 0.223 1.129 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 10.908 taildiff: 0.364728191 B: scale 662.965 356.409 377.345 160.675 Yoruba.DG -0.228 0.041 0.126 0.061 Papuan.DG 0.739 -0.473 -1.060 1.255 China_Tianyuan 0.674 -0.247 -1.114 0.870 Karitiana.DG -0.144 0.571 -0.883 0.357 Russia_Ust_Ishim_HG.DG -0.094 0.174 -0.385 0.518 Dai.DG 0.331 -0.456 -1.057 1.027 Han.DG 0.380 -0.348 -1.008 1.009 Georgia_Kotias.SG -0.566 1.464 1.295 -1.275 Russia_Kostenki14.SG -0.238 1.303 -0.002 -0.483 Iran_GanjDareh_N 0.800 0.381 1.962 -1.461 Turkey_N -1.194 1.442 0.989 -1.194 Jordan_PPNB -1.607 0.854 0.609 -1.334 Luxembourg_Loschbour.DG -2.577 2.287 -0.824 -0.998 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_MBA_Poltavka 0.000 2.000 0.000 0.000 Turkmenistan_Gonur_BA_1 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: 0.262 0.374 0.198 0.167 totmean: 0.262 0.374 0.198 0.167 boot mean: 0.034 0.372 0.343 0.250 std. errors: 9.288 0.071 5.876 3.375 error covariance (* 1,000,000) 86266935 -342417 -54578203 -31346315 -342417 5060 213306 124050 -54578203 213306 34533103 19831793 -31346315 124050 19831793 11390471 summ: Sohi 4 0.364728 0.034 0.372 0.343 0.250 86266935 -342417 -54578203 -31346315 5060 ... 213306 124050 34533103 19831793 11390471 fixed pat wt dof chisq tail prob 0000 0 10 10.908 0.364728 0.262 0.374 0.198 0.167 0001 1 11 27.456 0.00391896 0.695 0.412 -0.107 0.000 infeasible 0010 1 11 17.128 0.104142 0.522 0.409 0.000 0.069 0100 1 11 54.858 8.22854e-08 -3.616 0.000 2.981 1.635 infeasible 1000 1 11 14.124 0.226222 0.000 0.352 0.386 0.262 0011 2 12 20.391 0.0600481 0.631 0.369 0.000 0.000 0101 2 12 91.894 2.12011e-14 0.863 0.000 0.137 0.000 0110 2 12 85.139 4.27928e-13 1.074 0.000 0.000 -0.074 infeasible 1001 2 12 218.777 0 0.000 0.542 0.458 0.000 1010 2 12 80.202 3.77662e-12 0.000 0.727 0.000 0.273 1100 2 12 64.718 3.07335e-09 0.000 0.000 0.695 0.305 0111 3 13 89.083 2.09269e-13 1.000 0.000 0.000 0.000 1011 3 13 271.759 0 0.000 1.000 0.000 0.000 1101 3 13 303.286 0 0.000 0.000 1.000 0.000 1110 3 13 782.472 0 0.000 0.000 0.000 1.000 best pat: 0000 0.364728 - - best pat: 1000 0.226222 chi(nested): 3.216 p-value for nested model: 0.0729346 best pat: 0011 0.0600481 not nested best pat: 0111 2.09269e-13 chi(nested): 68.692 p-value for nested model: 1.15112e-16 coeffs: 0.262 0.374 0.198 0.167 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000345 -1.312923 details: Russia_MBA_Poltavka Yoruba.DG 0.000115 0.496158 details: Turkmenistan_Gonur_BA_1 Yoruba.DG 0.000333 1.340523 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000382 1.183513 dscore: Yoruba.DG f4: 0.000083 Z: 0.391787 details: Iran_ShahrISokhta_BA2 Papuan.DG 0.001115 2.076381 details: Russia_MBA_Poltavka Papuan.DG -0.001327 -2.682021 details: Turkmenistan_Gonur_BA_1 Papuan.DG -0.002809 -5.374565 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007809 10.881474 dscore: Papuan.DG f4: 0.000540 Z: 1.201509 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.001016 1.299368 details: Russia_MBA_Poltavka China_Tianyuan -0.000694 -0.976970 details: Turkmenistan_Gonur_BA_1 China_Tianyuan -0.002952 -3.900336 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005416 5.324860 dscore: China_Tianyuan f4: 0.000324 Z: 0.495526 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.000218 -0.367026 details: Russia_MBA_Poltavka Karitiana.DG 0.001603 2.997059 details: Turkmenistan_Gonur_BA_1 Karitiana.DG -0.002341 -4.167011 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002223 2.914646 dscore: Karitiana.DG f4: 0.000449 Z: 0.919954 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.000141 -0.223366 details: Russia_MBA_Poltavka Russia_Ust_Ishim_HG.DG 0.000489 0.858384 details: Turkmenistan_Gonur_BA_1 Russia_Ust_Ishim_HG.DG -0.001020 -1.759622 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.003225 3.886983 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000481 Z: 0.928226 details: Iran_ShahrISokhta_BA2 Dai.DG 0.000499 0.953229 details: Russia_MBA_Poltavka Dai.DG -0.001279 -2.829367 details: Turkmenistan_Gonur_BA_1 Dai.DG -0.002802 -5.772467 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006394 9.365346 dscore: Dai.DG f4: 0.000163 Z: 0.380658 details: Iran_ShahrISokhta_BA2 Han.DG 0.000573 1.154643 details: Russia_MBA_Poltavka Han.DG -0.000976 -2.248961 details: Turkmenistan_Gonur_BA_1 Han.DG -0.002672 -5.720443 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006281 9.752993 dscore: Han.DG f4: 0.000302 Z: 0.745731 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000854 -1.117358 details: Russia_MBA_Poltavka Georgia_Kotias.SG 0.004107 6.060151 details: Turkmenistan_Gonur_BA_1 Georgia_Kotias.SG 0.003433 4.860515 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.007934 -8.028838 dscore: Georgia_Kotias.SG f4: 0.000669 Z: 1.074939 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.000359 -0.486338 details: Russia_MBA_Poltavka Russia_Kostenki14.SG 0.003657 5.241783 details: Turkmenistan_Gonur_BA_1 Russia_Kostenki14.SG -0.000005 -0.006491 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.003005 -3.161035 dscore: Russia_Kostenki14.SG f4: 0.000771 Z: 1.239289 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.001207 2.181294 details: Russia_MBA_Poltavka Iran_GanjDareh_N 0.001068 2.136573 details: Turkmenistan_Gonur_BA_1 Iran_GanjDareh_N 0.005200 9.688969 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009096 -11.983312 dscore: Iran_GanjDareh_N f4: 0.000229 Z: 0.497640 details: Iran_ShahrISokhta_BA2 Turkey_N -0.001802 -3.493557 details: Russia_MBA_Poltavka Turkey_N 0.004047 9.113586 details: Turkmenistan_Gonur_BA_1 Turkey_N 0.002621 5.625363 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.007431 -11.493733 dscore: Turkey_N f4: 0.000322 Z: 0.775093 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002423 -3.041623 details: Russia_MBA_Poltavka Jordan_PPNB 0.002397 3.310258 details: Turkmenistan_Gonur_BA_1 Jordan_PPNB 0.001614 2.092433 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008304 -7.867370 dscore: Jordan_PPNB f4: -0.000802 Z: -1.185011 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.003887 -5.389724 details: Russia_MBA_Poltavka Luxembourg_Loschbour.DG 0.006418 9.666369 details: Turkmenistan_Gonur_BA_1 Luxembourg_Loschbour.DG -0.002184 -3.312396 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006208 -6.824114 dscore: Luxembourg_Loschbour.DG f4: -0.000086 Z: -0.143076 gendstat: Mbuti.DG Yoruba.DG 0.392 gendstat: Mbuti.DG Papuan.DG 1.202 gendstat: Mbuti.DG China_Tianyuan 0.496 gendstat: Mbuti.DG Karitiana.DG 0.920 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.928 gendstat: Mbuti.DG Dai.DG 0.381 gendstat: Mbuti.DG Han.DG 0.746 gendstat: Mbuti.DG Georgia_Kotias.SG 1.075 gendstat: Mbuti.DG Russia_Kostenki14.SG 1.239 gendstat: Mbuti.DG Iran_GanjDareh_N 0.498 gendstat: Mbuti.DG Turkey_N 0.775 gendstat: Mbuti.DG Jordan_PPNB -1.185 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.143 gendstat: Yoruba.DG Papuan.DG 1.076 gendstat: Yoruba.DG China_Tianyuan 0.387 gendstat: Yoruba.DG Karitiana.DG 0.786 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG 0.801 gendstat: Yoruba.DG Dai.DG 0.209 gendstat: Yoruba.DG Han.DG 0.597 gendstat: Yoruba.DG Georgia_Kotias.SG 0.989 gendstat: Yoruba.DG Russia_Kostenki14.SG 1.164 gendstat: Yoruba.DG Iran_GanjDareh_N 0.341 gendstat: Yoruba.DG Turkey_N 0.648 gendstat: Yoruba.DG Jordan_PPNB -1.363 gendstat: Yoruba.DG Luxembourg_Loschbour.DG -0.297 gendstat: Papuan.DG China_Tianyuan -0.341 gendstat: Papuan.DG Karitiana.DG -0.204 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.106 gendstat: Papuan.DG Dai.DG -0.971 gendstat: Papuan.DG Han.DG -0.647 gendstat: Papuan.DG Georgia_Kotias.SG 0.196 gendstat: Papuan.DG Russia_Kostenki14.SG 0.351 gendstat: Papuan.DG Iran_GanjDareh_N -0.588 gendstat: Papuan.DG Turkey_N -0.472 gendstat: Papuan.DG Jordan_PPNB -1.827 gendstat: Papuan.DG Luxembourg_Loschbour.DG -1.014 gendstat: China_Tianyuan Karitiana.DG 0.189 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG 0.217 gendstat: China_Tianyuan Dai.DG -0.273 gendstat: China_Tianyuan Han.DG -0.038 gendstat: China_Tianyuan Georgia_Kotias.SG 0.430 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.559 gendstat: China_Tianyuan Iran_GanjDareh_N -0.134 gendstat: China_Tianyuan Turkey_N -0.004 gendstat: China_Tianyuan Jordan_PPNB -1.271 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.520 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.057 gendstat: Karitiana.DG Dai.DG -0.762 gendstat: Karitiana.DG Han.DG -0.423 gendstat: Karitiana.DG Georgia_Kotias.SG 0.334 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.492 gendstat: Karitiana.DG Iran_GanjDareh_N -0.423 gendstat: Karitiana.DG Turkey_N -0.270 gendstat: Karitiana.DG Jordan_PPNB -1.741 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.882 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.636 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.363 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.270 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.407 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.446 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.315 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -1.768 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.865 gendstat: Dai.DG Han.DG 0.929 gendstat: Dai.DG Georgia_Kotias.SG 0.823 gendstat: Dai.DG Russia_Kostenki14.SG 0.961 gendstat: Dai.DG Iran_GanjDareh_N 0.139 gendstat: Dai.DG Turkey_N 0.385 gendstat: Dai.DG Jordan_PPNB -1.413 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.428 gendstat: Han.DG Georgia_Kotias.SG 0.604 gendstat: Han.DG Russia_Kostenki14.SG 0.757 gendstat: Han.DG Iran_GanjDareh_N -0.156 gendstat: Han.DG Turkey_N 0.049 gendstat: Han.DG Jordan_PPNB -1.631 gendstat: Han.DG Luxembourg_Loschbour.DG -0.668 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG 0.136 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.757 gendstat: Georgia_Kotias.SG Turkey_N -0.647 gendstat: Georgia_Kotias.SG Jordan_PPNB -1.885 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -1.093 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.839 gendstat: Russia_Kostenki14.SG Turkey_N -0.755 gendstat: Russia_Kostenki14.SG Jordan_PPNB -1.999 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -1.236 gendstat: Iran_GanjDareh_N Turkey_N 0.240 gendstat: Iran_GanjDareh_N Jordan_PPNB -1.552 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.534 gendstat: Turkey_N Jordan_PPNB -1.948 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.820 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 0.972 ##end of qpAdm: 19.391 seconds cpu 1.483 Mbytes in use