qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 59189575 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Srubnaya_Alakul.SG Uzbekistan_SappaliTepe_BA Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 10 chisq: 10.186 tail: 0.424351753 dofdiff: 12 chisqdiff: -10.186 taildiff: 1 B: scale 1.000 1.000 1.000 Yoruba.DG -0.005 0.050 1.434 Papuan.DG -1.140 0.548 0.925 China_Tianyuan -0.934 0.474 -0.595 Karitiana.DG -0.458 1.078 -1.353 Russia_Ust_Ishim_HG.DG -0.324 0.507 0.955 Dai.DG -1.020 0.600 -0.003 Han.DG -1.006 0.667 -0.425 Georgia_Kotias.SG 1.349 -0.263 -1.070 Russia_Kostenki14.SG 0.596 0.863 -0.377 Iran_GanjDareh_N 1.213 -1.600 -0.730 Turkey_N 1.406 0.515 2.154 Jordan_PPNB 1.302 0.389 0.517 Luxembourg_Loschbour.DG 1.071 2.541 -0.295 A: scale 275.708 670.620 6027.368 Iran_ShahrISokhta_BA2 -0.263 -0.848 -0.787 Russia_Srubnaya_Alakul.SG 0.773 1.443 0.255 Uzbekistan_SappaliTepe_BA 0.591 -1.051 0.774 Indian_GreatAndaman_100BP.SG -1.727 0.310 1.648 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 10.186 taildiff: 0.424351753 B: scale 551.392 300.969 350.579 156.045 Yoruba.DG -0.152 0.029 -0.002 0.047 Papuan.DG -0.033 -0.632 -1.216 1.147 China_Tianyuan 0.253 -0.468 -1.064 0.859 Karitiana.DG -0.661 0.186 -1.197 0.345 Russia_Ust_Ishim_HG.DG -0.586 -0.020 -0.617 0.347 Dai.DG -0.171 -0.571 -1.293 0.937 Han.DG -0.074 -0.460 -1.262 0.948 Georgia_Kotias.SG -0.539 0.909 0.981 -1.494 Russia_Kostenki14.SG -1.232 0.939 -0.248 -0.646 Iran_GanjDareh_N 0.258 -0.111 1.597 -1.431 Turkey_N -1.409 1.508 0.772 -1.318 Jordan_PPNB -1.195 1.343 0.735 -1.249 Luxembourg_Loschbour.DG -2.609 2.452 -0.775 -0.966 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Srubnaya_Alakul.SG 0.000 2.000 0.000 0.000 Uzbekistan_SappaliTepe_BA 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: 0.452 0.323 0.111 0.114 totmean: 0.452 0.323 0.111 0.114 boot mean: 0.269 0.301 0.246 0.185 std. errors: 5.024 0.590 3.645 1.967 error covariance (* 1,000,000) 25239980 2952414 -18310805 -9881589 2952414 347518 -2143862 -1156069 -18310805 -2143862 13286991 7167676 -9881589 -1156069 7167676 3869982 summ: Sohi 4 0.424352 0.269 0.301 0.246 0.185 25239980 2952414 -18310805 -9881589 347518 ... -2143862 -1156069 13286991 7167676 3869982 fixed pat wt dof chisq tail prob 0000 0 10 10.186 0.424352 0.452 0.323 0.111 0.114 0001 1 11 32.844 0.000557678 0.762 0.361 -0.123 0.000 infeasible 0010 1 11 32.295 0.000683767 0.600 0.341 0.000 0.059 0100 1 11 46.078 3.1324e-06 -1.771 0.000 1.824 0.948 infeasible 1000 1 11 21.334 0.0300686 0.000 0.255 0.464 0.281 0011 2 12 16.136 0.185079 0.683 0.317 0.000 0.000 0101 2 12 147.411 1.8989e-25 0.880 0.000 0.120 0.000 0110 2 12 128.715 1.11745e-21 1.062 0.000 0.000 -0.062 infeasible 1001 2 12 419.875 0 0.000 0.476 0.524 0.000 1010 2 12 208.231 0 0.000 0.687 0.000 0.313 1100 2 12 84.683 5.23605e-13 0.000 0.000 0.690 0.310 0111 3 13 133.275 4.65262e-22 1.000 0.000 0.000 0.000 1011 3 13 608.626 0 0.000 1.000 0.000 0.000 1101 3 13 602.597 0 0.000 0.000 1.000 0.000 1110 3 13 1220.267 0 0.000 0.000 0.000 1.000 best pat: 0000 0.424352 - - best pat: 1000 0.0300686 chi(nested): 11.149 p-value for nested model: 0.000840977 best pat: 0011 0.185079 not nested best pat: 0111 4.65262e-22 chi(nested): 117.139 p-value for nested model: 2.67639e-27 coeffs: 0.452 0.323 0.111 0.114 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000276 -1.547905 details: Russia_Srubnaya_Alakul.SG Yoruba.DG 0.000097 0.596657 details: Uzbekistan_SappaliTepe_BA Yoruba.DG -0.000007 -0.040817 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000302 1.265429 dscore: Yoruba.DG f4: -0.000060 Z: -0.393371 details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000059 -0.136677 details: Russia_Srubnaya_Alakul.SG Papuan.DG -0.002099 -5.052779 details: Uzbekistan_SappaliTepe_BA Papuan.DG -0.003468 -8.502931 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007352 12.076970 dscore: Papuan.DG f4: -0.000254 Z: -0.656444 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000459 0.737921 details: Russia_Srubnaya_Alakul.SG China_Tianyuan -0.001555 -2.685664 details: Uzbekistan_SappaliTepe_BA China_Tianyuan -0.003036 -5.514799 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005506 6.772233 dscore: China_Tianyuan f4: -0.000006 Z: -0.010922 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001199 -2.463026 details: Russia_Srubnaya_Alakul.SG Karitiana.DG 0.000617 1.345274 details: Uzbekistan_SappaliTepe_BA Karitiana.DG -0.003414 -7.801812 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002214 3.353619 dscore: Karitiana.DG f4: -0.000472 Z: -1.099653 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001063 -1.970547 details: Russia_Srubnaya_Alakul.SG Russia_Ust_Ishim_HG.DG -0.000067 -0.134219 details: Uzbekistan_SappaliTepe_BA Russia_Ust_Ishim_HG.DG -0.001761 -3.685329 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002223 3.064778 dscore: Russia_Ust_Ishim_HG.DG f4: -0.000446 Z: -0.951211 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000310 -0.737020 details: Russia_Srubnaya_Alakul.SG Dai.DG -0.001897 -4.945314 details: Uzbekistan_SappaliTepe_BA Dai.DG -0.003689 -9.782266 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006006 10.457575 dscore: Dai.DG f4: -0.000480 Z: -1.303799 details: Iran_ShahrISokhta_BA2 Han.DG -0.000134 -0.334490 details: Russia_Srubnaya_Alakul.SG Han.DG -0.001528 -4.117902 details: Uzbekistan_SappaliTepe_BA Han.DG -0.003600 -9.960180 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006075 11.278217 dscore: Han.DG f4: -0.000264 Z: -0.754590 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000977 -1.666190 details: Russia_Srubnaya_Alakul.SG Georgia_Kotias.SG 0.003021 5.528076 details: Uzbekistan_SappaliTepe_BA Georgia_Kotias.SG 0.002798 5.195355 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009575 -12.583657 dscore: Georgia_Kotias.SG f4: -0.000245 Z: -0.477887 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002234 -3.862432 details: Russia_Srubnaya_Alakul.SG Russia_Kostenki14.SG 0.003121 5.727468 details: Uzbekistan_SappaliTepe_BA Russia_Kostenki14.SG -0.000707 -1.283455 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004137 -5.584240 dscore: Russia_Kostenki14.SG f4: -0.000553 Z: -1.103652 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000468 1.118795 details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N -0.000369 -0.975488 details: Uzbekistan_SappaliTepe_BA Iran_GanjDareh_N 0.004555 12.198043 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009168 -15.844725 dscore: Iran_GanjDareh_N f4: -0.000443 Z: -1.231429 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002556 -6.603648 details: Russia_Srubnaya_Alakul.SG Turkey_N 0.005011 13.856351 details: Uzbekistan_SappaliTepe_BA Turkey_N 0.002203 6.272293 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008445 -16.404484 dscore: Turkey_N f4: -0.000255 Z: -0.757387 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002168 -4.007158 details: Russia_Srubnaya_Alakul.SG Jordan_PPNB 0.004462 8.986589 details: Uzbekistan_SappaliTepe_BA Jordan_PPNB 0.002095 4.474468 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008006 -11.418981 dscore: Jordan_PPNB f4: -0.000218 Z: -0.476409 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004732 -8.066788 details: Russia_Srubnaya_Alakul.SG Luxembourg_Loschbour.DG 0.008146 14.627264 details: Uzbekistan_SappaliTepe_BA Luxembourg_Loschbour.DG -0.002209 -4.129327 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006192 -8.148411 dscore: Luxembourg_Loschbour.DG f4: -0.000463 Z: -0.886265 gendstat: Mbuti.DG Yoruba.DG -0.393 gendstat: Mbuti.DG Papuan.DG -0.656 gendstat: Mbuti.DG China_Tianyuan -0.011 gendstat: Mbuti.DG Karitiana.DG -1.100 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG -0.951 gendstat: Mbuti.DG Dai.DG -1.304 gendstat: Mbuti.DG Han.DG -0.755 gendstat: Mbuti.DG Georgia_Kotias.SG -0.478 gendstat: Mbuti.DG Russia_Kostenki14.SG -1.104 gendstat: Mbuti.DG Iran_GanjDareh_N -1.231 gendstat: Mbuti.DG Turkey_N -0.757 gendstat: Mbuti.DG Jordan_PPNB -0.476 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.886 gendstat: Yoruba.DG Papuan.DG -0.521 gendstat: Yoruba.DG China_Tianyuan 0.104 gendstat: Yoruba.DG Karitiana.DG -0.991 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG -0.845 gendstat: Yoruba.DG Dai.DG -1.203 gendstat: Yoruba.DG Han.DG -0.616 gendstat: Yoruba.DG Georgia_Kotias.SG -0.371 gendstat: Yoruba.DG Russia_Kostenki14.SG -1.015 gendstat: Yoruba.DG Iran_GanjDareh_N -1.112 gendstat: Yoruba.DG Turkey_N -0.617 gendstat: Yoruba.DG Jordan_PPNB -0.355 gendstat: Yoruba.DG Luxembourg_Loschbour.DG -0.801 gendstat: Papuan.DG China_Tianyuan 0.481 gendstat: Papuan.DG Karitiana.DG -0.531 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.388 gendstat: Papuan.DG Dai.DG -0.653 gendstat: Papuan.DG Han.DG -0.029 gendstat: Papuan.DG Georgia_Kotias.SG 0.017 gendstat: Papuan.DG Russia_Kostenki14.SG -0.569 gendstat: Papuan.DG Iran_GanjDareh_N -0.437 gendstat: Papuan.DG Turkey_N -0.002 gendstat: Papuan.DG Jordan_PPNB 0.072 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.390 gendstat: China_Tianyuan Karitiana.DG -0.865 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.712 gendstat: China_Tianyuan Dai.DG -1.015 gendstat: China_Tianyuan Han.DG -0.569 gendstat: China_Tianyuan Georgia_Kotias.SG -0.361 gendstat: China_Tianyuan Russia_Kostenki14.SG -0.821 gendstat: China_Tianyuan Iran_GanjDareh_N -0.770 gendstat: China_Tianyuan Turkey_N -0.462 gendstat: China_Tianyuan Jordan_PPNB -0.337 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.711 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.049 gendstat: Karitiana.DG Dai.DG -0.024 gendstat: Karitiana.DG Han.DG 0.666 gendstat: Karitiana.DG Georgia_Kotias.SG 0.403 gendstat: Karitiana.DG Russia_Kostenki14.SG -0.151 gendstat: Karitiana.DG Iran_GanjDareh_N 0.068 gendstat: Karitiana.DG Turkey_N 0.542 gendstat: Karitiana.DG Jordan_PPNB 0.496 gendstat: Karitiana.DG Luxembourg_Loschbour.DG 0.017 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.073 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.396 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.331 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.182 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N 0.007 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.422 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB 0.415 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.029 gendstat: Dai.DG Han.DG 1.684 gendstat: Dai.DG Georgia_Kotias.SG 0.445 gendstat: Dai.DG Russia_Kostenki14.SG -0.144 gendstat: Dai.DG Iran_GanjDareh_N 0.094 gendstat: Dai.DG Turkey_N 0.628 gendstat: Dai.DG Jordan_PPNB 0.561 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.034 gendstat: Han.DG Georgia_Kotias.SG 0.037 gendstat: Han.DG Russia_Kostenki14.SG -0.584 gendstat: Han.DG Iran_GanjDareh_N -0.458 gendstat: Han.DG Turkey_N 0.026 gendstat: Han.DG Jordan_PPNB 0.100 gendstat: Han.DG Luxembourg_Loschbour.DG -0.405 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.502 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.399 gendstat: Georgia_Kotias.SG Turkey_N -0.022 gendstat: Georgia_Kotias.SG Jordan_PPNB 0.046 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.367 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.222 gendstat: Russia_Kostenki14.SG Turkey_N 0.663 gendstat: Russia_Kostenki14.SG Jordan_PPNB 0.620 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG 0.163 gendstat: Iran_GanjDareh_N Turkey_N 0.575 gendstat: Iran_GanjDareh_N Jordan_PPNB 0.482 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.040 gendstat: Turkey_N Jordan_PPNB 0.101 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.478 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG -0.461 ##end of qpAdm: 19.598 seconds cpu 1.483 Mbytes in use