qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 55276306 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Czech_CordedWare Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 11 chisq: 8.891 tail: 0.631926514 dofdiff: 13 chisqdiff: -8.891 taildiff: 1 B: scale 1.000 1.000 Yoruba.DG -0.031 0.138 Papuan.DG -1.016 0.683 China_Tianyuan -0.684 0.461 Karitiana.DG -0.209 0.753 Russia_Ust_Ishim_HG.DG -0.255 0.604 Dai.DG -0.894 0.484 Han.DG -0.867 0.513 Georgia_Kotias.SG 1.309 -0.617 Russia_Kostenki14.SG 0.736 0.606 Iran_GanjDareh_N 0.945 -1.783 Turkey_N 1.515 0.755 Jordan_PPNB 1.392 0.525 Luxembourg_Loschbour.DG 1.568 2.469 A: scale 246.233 739.441 Iran_ShahrISokhta_BA2 -0.231 -0.785 Czech_CordedWare 0.762 0.960 Indian_GreatAndaman_100BP.SG -1.538 1.209 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 8.891 taildiff: 0.631926514 B: scale 551.392 296.724 156.045 Yoruba.DG -0.152 -0.001 0.047 Papuan.DG -0.033 -0.698 1.147 China_Tianyuan 0.253 -0.338 0.859 Karitiana.DG -0.661 -0.006 0.345 Russia_Ust_Ishim_HG.DG -0.586 -0.116 0.347 Dai.DG -0.171 -0.737 0.937 Han.DG -0.074 -0.646 0.948 Georgia_Kotias.SG -0.539 0.903 -1.494 Russia_Kostenki14.SG -1.232 0.753 -0.646 Iran_GanjDareh_N 0.258 0.082 -1.431 Turkey_N -1.409 1.635 -1.318 Jordan_PPNB -1.195 1.444 -1.249 Luxembourg_Loschbour.DG -2.609 2.297 -0.966 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Czech_CordedWare 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.563 0.349 0.088 totmean: 0.563 0.349 0.088 boot mean: 0.563 0.349 0.088 std. errors: 0.043 0.028 0.023 error covariance (* 1,000,000) 1866 -1078 -788 -1078 808 270 -788 270 518 summ: Sohi 3 0.631927 0.563 0.349 0.088 1866 -1078 -788 808 270 ... 518 fixed pat wt dof chisq tail prob 000 0 11 8.891 0.631927 0.563 0.349 0.088 001 1 12 23.403 0.0244962 0.701 0.299 0.000 010 1 12 128.716 1.11712e-21 1.063 0.000 -0.063 infeasible 100 1 12 178.333 0 0.000 0.663 0.337 011 2 13 133.027 5.21453e-22 1.000 0.000 0.000 101 2 13 732.809 0 0.000 1.000 0.000 110 2 13 1217.685 0 0.000 0.000 1.000 best pat: 000 0.631927 - - best pat: 100 9.3785e-32 chi(nested): 169.441 p-value for nested model: 9.7987e-39 best pat: 011 5.21453e-22 not nested coeffs: 0.563 0.349 0.088 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000276 -1.547905 details: Czech_CordedWare Yoruba.DG -0.000004 -0.027235 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000302 1.265429 dscore: Yoruba.DG f4: -0.000130 Z: -0.836617 details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000059 -0.136677 details: Czech_CordedWare Papuan.DG -0.002352 -6.079497 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007352 12.076970 dscore: Papuan.DG f4: -0.000206 Z: -0.529226 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000459 0.737921 details: Czech_CordedWare China_Tianyuan -0.001138 -2.145827 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005506 6.772233 dscore: China_Tianyuan f4: 0.000347 Z: 0.629198 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001199 -2.463026 details: Czech_CordedWare Karitiana.DG -0.000020 -0.047568 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002214 3.353619 dscore: Karitiana.DG f4: -0.000487 Z: -1.123936 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001063 -1.970547 details: Czech_CordedWare Russia_Ust_Ishim_HG.DG -0.000390 -0.846627 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002223 3.064778 dscore: Russia_Ust_Ishim_HG.DG f4: -0.000538 Z: -1.133534 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000310 -0.737020 details: Czech_CordedWare Dai.DG -0.002483 -6.818264 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006006 10.457575 dscore: Dai.DG f4: -0.000511 Z: -1.361940 details: Iran_ShahrISokhta_BA2 Han.DG -0.000134 -0.334490 details: Czech_CordedWare Han.DG -0.002178 -6.252409 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006075 11.278217 dscore: Han.DG f4: -0.000300 Z: -0.843767 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000977 -1.666190 details: Czech_CordedWare Georgia_Kotias.SG 0.003043 5.857075 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009575 -12.583657 dscore: Georgia_Kotias.SG f4: -0.000332 Z: -0.637930 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002234 -3.862432 details: Czech_CordedWare Russia_Kostenki14.SG 0.002539 4.953622 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004137 -5.584240 dscore: Russia_Kostenki14.SG f4: -0.000735 Z: -1.441709 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000468 1.118795 details: Czech_CordedWare Iran_GanjDareh_N 0.000278 0.772476 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009168 -15.844725 dscore: Iran_GanjDareh_N f4: -0.000449 Z: -1.211286 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002556 -6.603648 details: Czech_CordedWare Turkey_N 0.005511 16.292590 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008445 -16.404484 dscore: Turkey_N f4: -0.000260 Z: -0.758752 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002168 -4.007158 details: Czech_CordedWare Jordan_PPNB 0.004865 10.783738 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008006 -11.418981 dscore: Jordan_PPNB f4: -0.000228 Z: -0.488719 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004732 -8.066788 details: Czech_CordedWare Luxembourg_Loschbour.DG 0.007742 15.007812 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006192 -8.148411 dscore: Luxembourg_Loschbour.DG f4: -0.000506 Z: -0.964055 gendstat: Mbuti.DG Yoruba.DG -0.837 gendstat: Mbuti.DG Papuan.DG -0.529 gendstat: Mbuti.DG China_Tianyuan 0.629 gendstat: Mbuti.DG Karitiana.DG -1.124 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG -1.134 gendstat: Mbuti.DG Dai.DG -1.362 gendstat: Mbuti.DG Han.DG -0.844 gendstat: Mbuti.DG Georgia_Kotias.SG -0.638 gendstat: Mbuti.DG Russia_Kostenki14.SG -1.442 gendstat: Mbuti.DG Iran_GanjDareh_N -1.211 gendstat: Mbuti.DG Turkey_N -0.759 gendstat: Mbuti.DG Jordan_PPNB -0.489 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.964 gendstat: Yoruba.DG Papuan.DG -0.200 gendstat: Yoruba.DG China_Tianyuan 0.901 gendstat: Yoruba.DG Karitiana.DG -0.849 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG -0.881 gendstat: Yoruba.DG Dai.DG -1.069 gendstat: Yoruba.DG Han.DG -0.504 gendstat: Yoruba.DG Georgia_Kotias.SG -0.398 gendstat: Yoruba.DG Russia_Kostenki14.SG -1.224 gendstat: Yoruba.DG Iran_GanjDareh_N -0.896 gendstat: Yoruba.DG Turkey_N -0.402 gendstat: Yoruba.DG Jordan_PPNB -0.216 gendstat: Yoruba.DG Luxembourg_Loschbour.DG -0.741 gendstat: Papuan.DG China_Tianyuan 1.050 gendstat: Papuan.DG Karitiana.DG -0.678 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.661 gendstat: Papuan.DG Dai.DG -0.870 gendstat: Papuan.DG Han.DG -0.280 gendstat: Papuan.DG Georgia_Kotias.SG -0.224 gendstat: Papuan.DG Russia_Kostenki14.SG -0.991 gendstat: Papuan.DG Iran_GanjDareh_N -0.552 gendstat: Papuan.DG Turkey_N -0.135 gendstat: Papuan.DG Jordan_PPNB -0.044 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.547 gendstat: China_Tianyuan Karitiana.DG -1.535 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -1.413 gendstat: China_Tianyuan Dai.DG -1.815 gendstat: China_Tianyuan Han.DG -1.408 gendstat: China_Tianyuan Georgia_Kotias.SG -1.010 gendstat: China_Tianyuan Russia_Kostenki14.SG -1.618 gendstat: China_Tianyuan Iran_GanjDareh_N -1.381 gendstat: China_Tianyuan Turkey_N -1.121 gendstat: China_Tianyuan Jordan_PPNB -0.909 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -1.310 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.097 gendstat: Karitiana.DG Dai.DG -0.074 gendstat: Karitiana.DG Han.DG 0.592 gendstat: Karitiana.DG Georgia_Kotias.SG 0.268 gendstat: Karitiana.DG Russia_Kostenki14.SG -0.460 gendstat: Karitiana.DG Iran_GanjDareh_N 0.085 gendstat: Karitiana.DG Turkey_N 0.558 gendstat: Karitiana.DG Jordan_PPNB 0.501 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.038 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG 0.058 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.515 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.334 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.334 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N 0.175 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.613 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB 0.562 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG 0.053 gendstat: Dai.DG Han.DG 1.626 gendstat: Dai.DG Georgia_Kotias.SG 0.330 gendstat: Dai.DG Russia_Kostenki14.SG -0.443 gendstat: Dai.DG Iran_GanjDareh_N 0.153 gendstat: Dai.DG Turkey_N 0.687 gendstat: Dai.DG Jordan_PPNB 0.600 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.009 gendstat: Han.DG Georgia_Kotias.SG -0.062 gendstat: Han.DG Russia_Kostenki14.SG -0.876 gendstat: Han.DG Iran_GanjDareh_N -0.371 gendstat: Han.DG Turkey_N 0.114 gendstat: Han.DG Jordan_PPNB 0.157 gendstat: Han.DG Luxembourg_Loschbour.DG -0.416 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.648 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.230 gendstat: Georgia_Kotias.SG Turkey_N 0.154 gendstat: Georgia_Kotias.SG Jordan_PPNB 0.180 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.290 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.564 gendstat: Russia_Kostenki14.SG Turkey_N 1.039 gendstat: Russia_Kostenki14.SG Jordan_PPNB 0.924 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG 0.407 gendstat: Iran_GanjDareh_N Turkey_N 0.566 gendstat: Iran_GanjDareh_N Jordan_PPNB 0.467 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.109 gendstat: Turkey_N Jordan_PPNB 0.087 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.559 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG -0.520 ##end of qpAdm: 7.062 seconds cpu 1.110 Mbytes in use