qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 58670417 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Samara_EBA_Yamnaya Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 11 chisq: 16.423 tail: 0.126148329 dofdiff: 13 chisqdiff: -16.423 taildiff: 1 B: scale 1.000 1.000 Yoruba.DG -0.033 0.140 Papuan.DG -1.038 0.731 China_Tianyuan -0.647 0.555 Karitiana.DG -0.035 1.243 Russia_Ust_Ishim_HG.DG -0.274 0.695 Dai.DG -0.864 0.613 Han.DG -0.834 0.660 Georgia_Kotias.SG 1.590 -0.175 Russia_Kostenki14.SG 0.787 0.826 Iran_GanjDareh_N 1.192 -1.546 Turkey_N 1.369 0.430 Jordan_PPNB 1.220 0.189 Luxembourg_Loschbour.DG 1.433 2.444 A: scale 253.114 838.957 Iran_ShahrISokhta_BA2 -0.266 -1.033 Russia_Samara_EBA_Yamnaya 0.660 0.997 Indian_GreatAndaman_100BP.SG -1.579 0.969 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 16.423 taildiff: 0.126148329 B: scale 551.392 344.988 156.045 Yoruba.DG -0.152 -0.001 0.047 Papuan.DG -0.033 -0.658 1.147 China_Tianyuan 0.253 -0.175 0.859 Karitiana.DG -0.661 0.645 0.345 Russia_Ust_Ishim_HG.DG -0.586 -0.043 0.347 Dai.DG -0.171 -0.586 0.937 Han.DG -0.074 -0.463 0.948 Georgia_Kotias.SG -0.539 1.589 -1.494 Russia_Kostenki14.SG -1.232 0.997 -0.646 Iran_GanjDareh_N 0.258 0.449 -1.431 Turkey_N -1.409 1.264 -1.318 Jordan_PPNB -1.195 0.981 -1.249 Luxembourg_Loschbour.DG -2.609 2.298 -0.966 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Russia_Samara_EBA_Yamnaya 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.490 0.418 0.092 totmean: 0.490 0.418 0.092 boot mean: 0.490 0.418 0.092 std. errors: 0.051 0.036 0.024 error covariance (* 1,000,000) 2632 -1680 -952 -1680 1286 393 -952 393 559 summ: Sohi 3 0.126148 0.490 0.418 0.092 2632 -1680 -952 1286 393 ... 559 fixed pat wt dof chisq tail prob 000 0 11 16.423 0.126148 0.490 0.418 0.092 001 1 12 31.780 0.0014959 0.650 0.350 0.000 010 1 12 128.878 1.03639e-21 1.062 0.000 -0.062 infeasible 100 1 12 109.507 7.49044e-18 0.000 0.728 0.272 011 2 13 132.983 5.31973e-22 1.000 0.000 0.000 101 2 13 416.457 0 0.000 1.000 0.000 110 2 13 1216.705 0 0.000 0.000 1.000 best pat: 000 0.126148 - - best pat: 100 7.49044e-18 chi(nested): 93.084 p-value for nested model: 5.01176e-22 best pat: 011 5.31973e-22 not nested coeffs: 0.490 0.418 0.092 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000276 -1.547905 details: Russia_Samara_EBA_Yamnaya Yoruba.DG -0.000002 -0.009705 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000302 1.265429 dscore: Yoruba.DG f4: -0.000108 Z: -0.692143 details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000059 -0.136677 details: Russia_Samara_EBA_Yamnaya Papuan.DG -0.001906 -4.684892 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007352 12.076970 dscore: Papuan.DG f4: -0.000147 Z: -0.382726 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000459 0.737921 details: Russia_Samara_EBA_Yamnaya China_Tianyuan -0.000507 -0.921597 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005506 6.772233 dscore: China_Tianyuan f4: 0.000521 Z: 0.966016 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001199 -2.463026 details: Russia_Samara_EBA_Yamnaya Karitiana.DG 0.001870 4.136221 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002214 3.353619 dscore: Karitiana.DG f4: 0.000399 Z: 0.928474 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001063 -1.970547 details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim_HG.DG -0.000123 -0.250330 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002223 3.064778 dscore: Russia_Ust_Ishim_HG.DG f4: -0.000367 Z: -0.778918 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000310 -0.737020 details: Russia_Samara_EBA_Yamnaya Dai.DG -0.001698 -4.514346 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006006 10.457575 dscore: Dai.DG f4: -0.000307 Z: -0.836246 details: Iran_ShahrISokhta_BA2 Han.DG -0.000134 -0.334490 details: Russia_Samara_EBA_Yamnaya Han.DG -0.001342 -3.706394 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006075 11.278217 dscore: Han.DG f4: -0.000066 Z: -0.188609 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000977 -1.666190 details: Russia_Samara_EBA_Yamnaya Georgia_Kotias.SG 0.004607 8.018406 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009575 -12.583657 dscore: Georgia_Kotias.SG f4: 0.000563 Z: 1.072179 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002234 -3.862432 details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.002891 5.403082 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004137 -5.584240 dscore: Russia_Kostenki14.SG f4: -0.000267 Z: -0.530117 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000468 1.118795 details: Russia_Samara_EBA_Yamnaya Iran_GanjDareh_N 0.001302 3.491242 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009168 -15.844725 dscore: Iran_GanjDareh_N f4: -0.000073 Z: -0.201813 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002556 -6.603648 details: Russia_Samara_EBA_Yamnaya Turkey_N 0.003664 10.373612 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008445 -16.404484 dscore: Turkey_N f4: -0.000500 Z: -1.476650 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002168 -4.007158 details: Russia_Samara_EBA_Yamnaya Jordan_PPNB 0.002843 5.803979 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008006 -11.418981 dscore: Jordan_PPNB f4: -0.000612 Z: -1.310591 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004732 -8.066788 details: Russia_Samara_EBA_Yamnaya Luxembourg_Loschbour.DG 0.006661 11.942488 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006192 -8.148411 dscore: Luxembourg_Loschbour.DG f4: -0.000105 Z: -0.199446 gendstat: Mbuti.DG Yoruba.DG -0.692 gendstat: Mbuti.DG Papuan.DG -0.383 gendstat: Mbuti.DG China_Tianyuan 0.966 gendstat: Mbuti.DG Karitiana.DG 0.928 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG -0.779 gendstat: Mbuti.DG Dai.DG -0.836 gendstat: Mbuti.DG Han.DG -0.189 gendstat: Mbuti.DG Georgia_Kotias.SG 1.072 gendstat: Mbuti.DG Russia_Kostenki14.SG -0.530 gendstat: Mbuti.DG Iran_GanjDareh_N -0.202 gendstat: Mbuti.DG Turkey_N -1.477 gendstat: Mbuti.DG Jordan_PPNB -1.311 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.199 gendstat: Yoruba.DG Papuan.DG -0.105 gendstat: Yoruba.DG China_Tianyuan 1.216 gendstat: Yoruba.DG Karitiana.DG 1.211 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG -0.563 gendstat: Yoruba.DG Dai.DG -0.568 gendstat: Yoruba.DG Han.DG 0.128 gendstat: Yoruba.DG Georgia_Kotias.SG 1.312 gendstat: Yoruba.DG Russia_Kostenki14.SG -0.327 gendstat: Yoruba.DG Iran_GanjDareh_N 0.102 gendstat: Yoruba.DG Turkey_N -1.224 gendstat: Yoruba.DG Jordan_PPNB -1.113 gendstat: Yoruba.DG Luxembourg_Loschbour.DG 0.007 gendstat: Papuan.DG China_Tianyuan 1.283 gendstat: Papuan.DG Karitiana.DG 1.298 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.442 gendstat: Papuan.DG Dai.DG -0.454 gendstat: Papuan.DG Han.DG 0.242 gendstat: Papuan.DG Georgia_Kotias.SG 1.263 gendstat: Papuan.DG Russia_Kostenki14.SG -0.226 gendstat: Papuan.DG Iran_GanjDareh_N 0.170 gendstat: Papuan.DG Turkey_N -0.888 gendstat: Papuan.DG Jordan_PPNB -0.915 gendstat: Papuan.DG Luxembourg_Loschbour.DG 0.077 gendstat: China_Tianyuan Karitiana.DG -0.224 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -1.435 gendstat: China_Tianyuan Dai.DG -1.758 gendstat: China_Tianyuan Han.DG -1.281 gendstat: China_Tianyuan Georgia_Kotias.SG 0.064 gendstat: China_Tianyuan Russia_Kostenki14.SG -1.188 gendstat: China_Tianyuan Iran_GanjDareh_N -1.059 gendstat: China_Tianyuan Turkey_N -1.924 gendstat: China_Tianyuan Jordan_PPNB -1.791 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.967 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -1.457 gendstat: Karitiana.DG Dai.DG -2.117 gendstat: Karitiana.DG Han.DG -1.468 gendstat: Karitiana.DG Georgia_Kotias.SG 0.285 gendstat: Karitiana.DG Russia_Kostenki14.SG -1.232 gendstat: Karitiana.DG Iran_GanjDareh_N -1.072 gendstat: Karitiana.DG Turkey_N -2.214 gendstat: Karitiana.DG Jordan_PPNB -1.932 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.963 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG 0.131 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.662 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 1.504 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.172 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N 0.581 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.293 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB -0.445 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG 0.439 gendstat: Dai.DG Han.DG 1.860 gendstat: Dai.DG Georgia_Kotias.SG 1.612 gendstat: Dai.DG Russia_Kostenki14.SG 0.078 gendstat: Dai.DG Iran_GanjDareh_N 0.585 gendstat: Dai.DG Turkey_N -0.535 gendstat: Dai.DG Jordan_PPNB -0.646 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.404 gendstat: Han.DG Georgia_Kotias.SG 1.200 gendstat: Han.DG Russia_Kostenki14.SG -0.405 gendstat: Han.DG Iran_GanjDareh_N -0.018 gendstat: Han.DG Turkey_N -1.248 gendstat: Han.DG Jordan_PPNB -1.181 gendstat: Han.DG Luxembourg_Loschbour.DG -0.078 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -1.341 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -1.256 gendstat: Georgia_Kotias.SG Turkey_N -2.245 gendstat: Georgia_Kotias.SG Jordan_PPNB -1.997 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -1.100 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.389 gendstat: Russia_Kostenki14.SG Turkey_N -0.509 gendstat: Russia_Kostenki14.SG Jordan_PPNB -0.624 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG 0.287 gendstat: Iran_GanjDareh_N Turkey_N -1.299 gendstat: Iran_GanjDareh_N Jordan_PPNB -1.142 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.060 gendstat: Turkey_N Jordan_PPNB -0.306 gendstat: Turkey_N Luxembourg_Loschbour.DG 0.891 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG 0.945 ##end of qpAdm: 7.212 seconds cpu 1.110 Mbytes in use