qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 53420047 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Srubnaya_Alakul.SG Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Yoruba.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Jordan_PPNB Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 11 chisq: 6.091 tail: 0.867255564 dofdiff: 13 chisqdiff: -6.091 taildiff: 1 B: scale 1.000 1.000 Yoruba.DG -0.028 0.154 Papuan.DG -1.054 0.671 China_Tianyuan -0.781 0.317 Karitiana.DG -0.195 0.845 Russia_Ust_Ishim_HG.DG -0.264 0.648 Dai.DG -0.883 0.563 Han.DG -0.853 0.608 Georgia_Kotias.SG 1.371 -0.534 Russia_Kostenki14.SG 0.778 0.747 Iran_GanjDareh_N 0.990 -1.770 Turkey_N 1.453 0.636 Jordan_PPNB 1.345 0.457 Luxembourg_Loschbour.DG 1.510 2.453 A: scale 248.643 699.564 Iran_ShahrISokhta_BA2 -0.252 -0.785 Russia_Srubnaya_Alakul.SG 0.710 1.153 Indian_GreatAndaman_100BP.SG -1.559 1.027 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 6.091 taildiff: 0.867255564 B: scale 551.392 300.969 156.045 Yoruba.DG -0.152 0.029 0.047 Papuan.DG -0.033 -0.632 1.147 China_Tianyuan 0.253 -0.468 0.859 Karitiana.DG -0.661 0.186 0.345 Russia_Ust_Ishim_HG.DG -0.586 -0.020 0.347 Dai.DG -0.171 -0.571 0.937 Han.DG -0.074 -0.460 0.948 Georgia_Kotias.SG -0.539 0.909 -1.494 Russia_Kostenki14.SG -1.232 0.939 -0.646 Iran_GanjDareh_N 0.258 -0.111 -1.431 Turkey_N -1.409 1.508 -1.318 Jordan_PPNB -1.195 1.343 -1.249 Luxembourg_Loschbour.DG -2.609 2.452 -0.966 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Russia_Srubnaya_Alakul.SG 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.591 0.347 0.062 totmean: 0.591 0.347 0.062 boot mean: 0.591 0.347 0.062 std. errors: 0.041 0.028 0.022 error covariance (* 1,000,000) 1679 -995 -684 -995 792 203 -684 203 481 summ: Sohi 3 0.867256 0.591 0.347 0.062 1679 -995 -684 792 203 ... 481 fixed pat wt dof chisq tail prob 000 0 11 6.091 0.867256 0.591 0.347 0.062 001 1 12 14.127 0.292701 0.683 0.317 0.000 010 1 12 128.042 1.52496e-21 1.062 0.000 -0.062 infeasible 100 1 12 204.722 0 0.000 0.689 0.311 011 2 13 132.903 5.52066e-22 1.000 0.000 0.000 101 2 13 606.578 0 0.000 1.000 0.000 110 2 13 1216.801 0 0.000 0.000 1.000 best pat: 000 0.867256 - - best pat: 100 3.45226e-37 chi(nested): 198.632 p-value for nested model: 4.15318e-45 best pat: 011 5.52066e-22 not nested coeffs: 0.591 0.347 0.062 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Yoruba.DG -0.000276 -1.547905 details: Russia_Srubnaya_Alakul.SG Yoruba.DG 0.000097 0.596657 details: Indian_GreatAndaman_100BP.SG Yoruba.DG 0.000302 1.265429 dscore: Yoruba.DG f4: -0.000111 Z: -0.704852 details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000059 -0.136677 details: Russia_Srubnaya_Alakul.SG Papuan.DG -0.002099 -5.052779 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007352 12.076970 dscore: Papuan.DG f4: -0.000305 Z: -0.771728 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000459 0.737921 details: Russia_Srubnaya_Alakul.SG China_Tianyuan -0.001555 -2.685664 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005506 6.772233 dscore: China_Tianyuan f4: 0.000075 Z: 0.134017 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001199 -2.463026 details: Russia_Srubnaya_Alakul.SG Karitiana.DG 0.000617 1.345274 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002214 3.353619 dscore: Karitiana.DG f4: -0.000357 Z: -0.810843 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001063 -1.970547 details: Russia_Srubnaya_Alakul.SG Russia_Ust_Ishim_HG.DG -0.000067 -0.134219 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002223 3.064778 dscore: Russia_Ust_Ishim_HG.DG f4: -0.000513 Z: -1.065482 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000310 -0.737020 details: Russia_Srubnaya_Alakul.SG Dai.DG -0.001897 -4.945314 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.006006 10.457575 dscore: Dai.DG f4: -0.000467 Z: -1.238834 details: Iran_ShahrISokhta_BA2 Han.DG -0.000134 -0.334490 details: Russia_Srubnaya_Alakul.SG Han.DG -0.001528 -4.117902 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006075 11.278217 dscore: Han.DG f4: -0.000231 Z: -0.643437 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000977 -1.666190 details: Russia_Srubnaya_Alakul.SG Georgia_Kotias.SG 0.003021 5.528076 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009575 -12.583657 dscore: Georgia_Kotias.SG f4: -0.000126 Z: -0.241009 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002234 -3.862432 details: Russia_Srubnaya_Alakul.SG Russia_Kostenki14.SG 0.003121 5.727468 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004137 -5.584240 dscore: Russia_Kostenki14.SG f4: -0.000495 Z: -0.967041 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000468 1.118795 details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N -0.000369 -0.975488 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009168 -15.844725 dscore: Iran_GanjDareh_N f4: -0.000423 Z: -1.148818 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002556 -6.603648 details: Russia_Srubnaya_Alakul.SG Turkey_N 0.005011 13.856351 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008445 -16.404484 dscore: Turkey_N f4: -0.000298 Z: -0.866180 details: Iran_ShahrISokhta_BA2 Jordan_PPNB -0.002168 -4.007158 details: Russia_Srubnaya_Alakul.SG Jordan_PPNB 0.004462 8.986589 details: Indian_GreatAndaman_100BP.SG Jordan_PPNB -0.008006 -11.418981 dscore: Jordan_PPNB f4: -0.000232 Z: -0.489913 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004732 -8.066788 details: Russia_Srubnaya_Alakul.SG Luxembourg_Loschbour.DG 0.008146 14.627264 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006192 -8.148411 dscore: Luxembourg_Loschbour.DG f4: -0.000356 Z: -0.666907 gendstat: Mbuti.DG Yoruba.DG -0.705 gendstat: Mbuti.DG Papuan.DG -0.772 gendstat: Mbuti.DG China_Tianyuan 0.134 gendstat: Mbuti.DG Karitiana.DG -0.811 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG -1.065 gendstat: Mbuti.DG Dai.DG -1.239 gendstat: Mbuti.DG Han.DG -0.643 gendstat: Mbuti.DG Georgia_Kotias.SG -0.241 gendstat: Mbuti.DG Russia_Kostenki14.SG -0.967 gendstat: Mbuti.DG Iran_GanjDareh_N -1.149 gendstat: Mbuti.DG Turkey_N -0.866 gendstat: Mbuti.DG Jordan_PPNB -0.490 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.667 gendstat: Yoruba.DG Papuan.DG -0.510 gendstat: Yoruba.DG China_Tianyuan 0.346 gendstat: Yoruba.DG Karitiana.DG -0.577 gendstat: Yoruba.DG Russia_Ust_Ishim_HG.DG -0.859 gendstat: Yoruba.DG Dai.DG -0.996 gendstat: Yoruba.DG Han.DG -0.354 gendstat: Yoruba.DG Georgia_Kotias.SG -0.030 gendstat: Yoruba.DG Russia_Kostenki14.SG -0.772 gendstat: Yoruba.DG Iran_GanjDareh_N -0.882 gendstat: Yoruba.DG Turkey_N -0.583 gendstat: Yoruba.DG Jordan_PPNB -0.264 gendstat: Yoruba.DG Luxembourg_Loschbour.DG -0.477 gendstat: Papuan.DG China_Tianyuan 0.713 gendstat: Papuan.DG Karitiana.DG -0.123 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.408 gendstat: Papuan.DG Dai.DG -0.458 gendstat: Papuan.DG Han.DG 0.219 gendstat: Papuan.DG Georgia_Kotias.SG 0.315 gendstat: Papuan.DG Russia_Kostenki14.SG -0.353 gendstat: Papuan.DG Iran_GanjDareh_N -0.268 gendstat: Papuan.DG Turkey_N 0.016 gendstat: Papuan.DG Jordan_PPNB 0.142 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.093 gendstat: China_Tianyuan Karitiana.DG -0.780 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.925 gendstat: China_Tianyuan Dai.DG -1.127 gendstat: China_Tianyuan Han.DG -0.655 gendstat: China_Tianyuan Georgia_Kotias.SG -0.296 gendstat: China_Tianyuan Russia_Kostenki14.SG -0.841 gendstat: China_Tianyuan Iran_GanjDareh_N -0.855 gendstat: China_Tianyuan Turkey_N -0.679 gendstat: China_Tianyuan Jordan_PPNB -0.476 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.656 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.287 gendstat: Karitiana.DG Dai.DG -0.324 gendstat: Karitiana.DG Han.DG 0.392 gendstat: Karitiana.DG Georgia_Kotias.SG 0.397 gendstat: Karitiana.DG Russia_Kostenki14.SG -0.254 gendstat: Karitiana.DG Iran_GanjDareh_N -0.148 gendstat: Karitiana.DG Turkey_N 0.142 gendstat: Karitiana.DG Jordan_PPNB 0.238 gendstat: Karitiana.DG Luxembourg_Loschbour.DG 0.001 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG 0.097 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.597 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.622 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG 0.030 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N 0.172 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.463 gendstat: Russia_Ust_Ishim_HG.DG Jordan_PPNB 0.498 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG 0.259 gendstat: Dai.DG Han.DG 1.793 gendstat: Dai.DG Georgia_Kotias.SG 0.622 gendstat: Dai.DG Russia_Kostenki14.SG -0.055 gendstat: Dai.DG Iran_GanjDareh_N 0.106 gendstat: Dai.DG Turkey_N 0.458 gendstat: Dai.DG Jordan_PPNB 0.490 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.217 gendstat: Han.DG Georgia_Kotias.SG 0.197 gendstat: Han.DG Russia_Kostenki14.SG -0.524 gendstat: Han.DG Iran_GanjDareh_N -0.477 gendstat: Han.DG Turkey_N -0.193 gendstat: Han.DG Jordan_PPNB -0.003 gendstat: Han.DG Luxembourg_Loschbour.DG -0.249 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.586 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.583 gendstat: Georgia_Kotias.SG Turkey_N -0.363 gendstat: Georgia_Kotias.SG Jordan_PPNB -0.180 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.377 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.141 gendstat: Russia_Kostenki14.SG Turkey_N 0.427 gendstat: Russia_Kostenki14.SG Jordan_PPNB 0.474 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG 0.247 gendstat: Iran_GanjDareh_N Turkey_N 0.370 gendstat: Iran_GanjDareh_N Jordan_PPNB 0.397 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG 0.126 gendstat: Turkey_N Jordan_PPNB 0.177 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.129 gendstat: Jordan_PPNB Luxembourg_Loschbour.DG -0.227 ##end of qpAdm: 6.987 seconds cpu 1.110 Mbytes in use