qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 171058758 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_MLBA_Sintashta Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 2 dof: 10 chisq: 10.044 tail: 0.436632556 dofdiff: 12 chisqdiff: -10.044 taildiff: 1 B: scale 1.000 1.000 Papuan.DG -1.040 0.535 China_Tianyuan -0.747 0.278 Karitiana.DG -0.255 0.642 Russia_Ust_Ishim_HG.DG -0.273 0.559 Ami.DG -0.898 0.316 Dai.DG -0.903 0.379 Han.DG -0.871 0.430 Georgia_Kotias.SG 1.311 -0.484 Russia_Kostenki14.SG 0.719 0.613 Iran_GanjDareh_N 0.969 -1.615 Turkey_N 1.539 0.987 Luxembourg_Loschbour.DG 1.516 2.508 A: scale 242.706 674.763 Iran_ShahrISokhta_BA2 -0.196 -0.726 Russia_MLBA_Sintashta 0.731 1.119 Indian_GreatAndaman_100BP.SG -1.558 1.105 full rank f4info: f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 10.044 taildiff: 0.436632556 B: scale 565.582 287.219 153.075 Papuan.DG -0.032 -0.693 1.122 China_Tianyuan 0.293 -0.436 0.840 Karitiana.DG -0.674 -0.052 0.336 Russia_Ust_Ishim_HG.DG -0.603 -0.097 0.336 Ami.DG 0.069 -0.646 0.948 Dai.DG -0.180 -0.713 0.917 Han.DG -0.081 -0.601 0.929 Georgia_Kotias.SG -0.526 0.848 -1.472 Russia_Kostenki14.SG -1.237 0.740 -0.646 Iran_GanjDareh_N 0.234 -0.020 -1.419 Turkey_N -1.454 1.768 -1.300 Luxembourg_Loschbour.DG -2.660 2.374 -0.959 A: scale 1.732 1.732 1.732 Iran_ShahrISokhta_BA2 1.732 0.000 0.000 Russia_MLBA_Sintashta 0.000 1.732 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 1.732 best coefficients: 0.606 0.320 0.074 totmean: 0.606 0.320 0.074 boot mean: 0.607 0.320 0.074 std. errors: 0.040 0.025 0.023 error covariance (* 1,000,000) 1571 -835 -736 -835 628 207 -736 207 529 summ: Sohi 3 0.436633 0.607 0.320 0.074 1571 -835 -736 628 207 ... 529 fixed pat wt dof chisq tail prob 000 0 10 10.044 0.436633 0.606 0.320 0.074 001 1 11 19.315 0.0556751 0.715 0.285 0.000 010 1 11 126.326 9.6267e-22 1.060 0.000 -0.060 infeasible 100 1 11 217.352 0 0.000 0.644 0.356 011 2 12 132.791 1.69714e-22 1.000 0.000 0.000 101 2 12 806.376 0 0.000 1.000 0.000 110 2 12 1208.263 0 0.000 0.000 1.000 best pat: 000 0.436633 - - best pat: 100 1.83921e-40 chi(nested): 207.307 p-value for nested model: 5.31267e-47 best pat: 011 1.69714e-22 not nested coeffs: 0.606 0.320 0.074 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000056 -0.128668 details: Russia_MLBA_Sintashta Papuan.DG -0.002411 -6.047183 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007327 11.999040 dscore: Papuan.DG f4: -0.000263 Z: -0.666030 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000518 0.831362 details: Russia_MLBA_Sintashta China_Tianyuan -0.001518 -2.835921 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005491 6.754494 dscore: China_Tianyuan f4: 0.000234 Z: 0.421695 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001192 -2.441797 details: Russia_MLBA_Sintashta Karitiana.DG -0.000183 -0.421716 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002193 3.307452 dscore: Karitiana.DG f4: -0.000619 Z: -1.406376 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001066 -1.973710 details: Russia_MLBA_Sintashta Russia_Ust_Ishim_HG.DG -0.000337 -0.710429 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002193 3.011066 dscore: Russia_Ust_Ishim_HG.DG f4: -0.000592 Z: -1.233202 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000123 0.255515 details: Russia_MLBA_Sintashta Ami.DG -0.002249 -5.225671 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006194 9.372889 dscore: Ami.DG f4: -0.000187 Z: -0.435427 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000318 -0.755098 details: Russia_MLBA_Sintashta Dai.DG -0.002483 -6.667052 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.005988 10.405028 dscore: Dai.DG f4: -0.000544 Z: -1.433565 details: Iran_ShahrISokhta_BA2 Han.DG -0.000144 -0.357393 details: Russia_MLBA_Sintashta Han.DG -0.002093 -5.856042 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006067 11.229989 dscore: Han.DG f4: -0.000308 Z: -0.855253 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000930 -1.587984 details: Russia_MLBA_Sintashta Georgia_Kotias.SG 0.002953 5.624917 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009618 -12.608017 dscore: Georgia_Kotias.SG f4: -0.000331 Z: -0.630301 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002187 -3.783066 details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.002577 5.037677 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004217 -5.668760 dscore: Russia_Kostenki14.SG f4: -0.000813 Z: -1.585681 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000414 0.991036 details: Russia_MLBA_Sintashta Iran_GanjDareh_N -0.000068 -0.187013 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009271 -15.989183 dscore: Iran_GanjDareh_N f4: -0.000457 Z: -1.231783 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002571 -6.652495 details: Russia_MLBA_Sintashta Turkey_N 0.006155 17.791882 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008494 -16.426827 dscore: Turkey_N f4: -0.000218 Z: -0.633556 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004703 -7.985889 details: Russia_MLBA_Sintashta Luxembourg_Loschbour.DG 0.008267 15.546614 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006264 -8.207171 dscore: Luxembourg_Loschbour.DG f4: -0.000670 Z: -1.258135 gendstat: Mbuti.DG Papuan.DG -0.666 gendstat: Mbuti.DG China_Tianyuan 0.422 gendstat: Mbuti.DG Karitiana.DG -1.406 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG -1.233 gendstat: Mbuti.DG Ami.DG -0.435 gendstat: Mbuti.DG Dai.DG -1.434 gendstat: Mbuti.DG Han.DG -0.855 gendstat: Mbuti.DG Georgia_Kotias.SG -0.630 gendstat: Mbuti.DG Russia_Kostenki14.SG -1.586 gendstat: Mbuti.DG Iran_GanjDareh_N -1.232 gendstat: Mbuti.DG Turkey_N -0.634 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -1.258 gendstat: Papuan.DG China_Tianyuan 0.935 gendstat: Papuan.DG Karitiana.DG -0.841 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.650 gendstat: Papuan.DG Ami.DG 0.183 gendstat: Papuan.DG Dai.DG -0.788 gendstat: Papuan.DG Han.DG -0.131 gendstat: Papuan.DG Georgia_Kotias.SG -0.118 gendstat: Papuan.DG Russia_Kostenki14.SG -1.015 gendstat: Papuan.DG Iran_GanjDareh_N -0.439 gendstat: Papuan.DG Turkey_N 0.113 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.733 gendstat: China_Tianyuan Karitiana.DG -1.553 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -1.309 gendstat: China_Tianyuan Ami.DG -0.815 gendstat: China_Tianyuan Dai.DG -1.629 gendstat: China_Tianyuan Han.DG -1.169 gendstat: China_Tianyuan Georgia_Kotias.SG -0.834 gendstat: China_Tianyuan Russia_Kostenki14.SG -1.552 gendstat: China_Tianyuan Iran_GanjDareh_N -1.196 gendstat: China_Tianyuan Turkey_N -0.830 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -1.377 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.050 gendstat: Karitiana.DG Ami.DG 1.103 gendstat: Karitiana.DG Dai.DG 0.222 gendstat: Karitiana.DG Han.DG 0.978 gendstat: Karitiana.DG Georgia_Kotias.SG 0.495 gendstat: Karitiana.DG Russia_Kostenki14.SG -0.357 gendstat: Karitiana.DG Iran_GanjDareh_N 0.359 gendstat: Karitiana.DG Turkey_N 0.977 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.096 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG 0.782 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG 0.101 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.609 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.421 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.373 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N 0.262 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.818 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.129 gendstat: Ami.DG Dai.DG -1.327 gendstat: Ami.DG Han.DG -0.498 gendstat: Ami.DG Georgia_Kotias.SG -0.249 gendstat: Ami.DG Russia_Kostenki14.SG -1.121 gendstat: Ami.DG Iran_GanjDareh_N -0.584 gendstat: Ami.DG Turkey_N -0.073 gendstat: Ami.DG Luxembourg_Loschbour.DG -0.870 gendstat: Dai.DG Han.DG 1.791 gendstat: Dai.DG Georgia_Kotias.SG 0.391 gendstat: Dai.DG Russia_Kostenki14.SG -0.525 gendstat: Dai.DG Iran_GanjDareh_N 0.212 gendstat: Dai.DG Turkey_N 0.886 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.247 gendstat: Han.DG Georgia_Kotias.SG -0.043 gendstat: Han.DG Russia_Kostenki14.SG -1.006 gendstat: Han.DG Iran_GanjDareh_N -0.368 gendstat: Han.DG Turkey_N 0.255 gendstat: Han.DG Luxembourg_Loschbour.DG -0.722 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.772 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.247 gendstat: Georgia_Kotias.SG Turkey_N 0.238 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.560 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.697 gendstat: Russia_Kostenki14.SG Turkey_N 1.287 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG 0.252 gendstat: Iran_GanjDareh_N Turkey_N 0.708 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.399 gendstat: Turkey_N Luxembourg_Loschbour.DG -1.012 ##end of qpAdm: 6.570 seconds cpu 1.028 Mbytes in use