qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 176436161 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Afanasievo Turkmenistan_Gonur_BA_1 Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 9 chisq: 8.351 tail: 0.499214709 dofdiff: 11 chisqdiff: -8.351 taildiff: 1 B: scale 1.000 1.000 1.000 Papuan.DG -1.076 0.436 0.917 China_Tianyuan -0.817 0.669 -1.279 Karitiana.DG -0.295 1.379 -1.219 Russia_Ust_Ishim_HG.DG -0.322 0.558 0.770 Ami.DG -0.960 0.430 -0.404 Dai.DG -0.953 0.473 0.324 Han.DG -0.923 0.520 0.080 Georgia_Kotias.SG 1.492 0.373 -1.238 Russia_Kostenki14.SG 0.588 0.889 -0.092 Iran_GanjDareh_N 1.383 -1.085 -0.076 Turkey_N 1.363 0.592 2.351 Luxembourg_Loschbour.DG 0.980 2.452 0.309 A: scale 273.210 741.452 5105.283 Iran_ShahrISokhta_BA2 -0.189 -1.046 -1.847 Russia_Afanasievo 0.653 1.129 -0.607 Turkmenistan_Gonur_BA_1 0.664 -1.271 -0.063 Indian_GreatAndaman_100BP.SG -1.760 0.125 0.465 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 8.351 taildiff: 0.499214709 B: scale 565.582 361.807 333.180 153.075 Papuan.DG -0.032 -0.660 -1.082 1.122 China_Tianyuan 0.293 -0.162 -0.969 0.840 Karitiana.DG -0.674 0.635 -0.983 0.336 Russia_Ust_Ishim_HG.DG -0.603 -0.002 -0.604 0.336 Ami.DG 0.069 -0.569 -1.047 0.948 Dai.DG -0.180 -0.621 -1.128 0.917 Han.DG -0.081 -0.484 -1.058 0.929 Georgia_Kotias.SG -0.526 1.645 1.033 -1.472 Russia_Kostenki14.SG -1.237 0.875 -0.175 -0.646 Iran_GanjDareh_N 0.234 0.577 1.685 -1.419 Turkey_N -1.454 1.435 0.750 -1.300 Luxembourg_Loschbour.DG -2.660 2.080 -0.755 -0.959 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Afanasievo 0.000 2.000 0.000 0.000 Turkmenistan_Gonur_BA_1 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: -0.060 0.364 0.402 0.293 totmean: -0.060 0.364 0.402 0.293 boot mean: 0.087 0.399 0.279 0.235 std. errors: 9.644 1.631 7.559 3.683 error covariance (* 1,000,000) 93012013 15346519 -72850033 -35508499 15346519 2659635 -12119517 -5886636 -72850033 -12119517 57137421 27832129 -35508499 -5886636 27832129 13563006 summ: Sohi 4 0.499215 0.087 0.399 0.279 0.235 93012013 15346519 -72850033 -35508499 2659635 ... -12119517 -5886636 57137421 27832129 13563006 fixed pat wt dof chisq tail prob 0000 0 9 8.351 0.499215 -0.060 0.364 0.402 0.293 infeasible 0001 1 10 41.923 7.73835e-06 0.742 0.443 -0.185 0.000 infeasible 0010 1 10 29.101 0.00119985 0.475 0.428 0.000 0.096 0100 1 10 29.157 0.00117521 -2.413 0.000 2.250 1.163 infeasible 1000 1 10 10.026 0.438223 0.000 0.371 0.358 0.271 0011 2 11 33.247 0.000479826 0.640 0.360 0.000 0.000 0101 2 11 146.817 6.65442e-26 0.898 0.000 0.102 0.000 0110 2 11 145.863 1.0419e-25 1.066 0.000 0.000 -0.066 infeasible 1001 2 11 362.399 0 0.000 0.674 0.326 0.000 1010 2 11 86.794 7.06385e-14 0.000 0.730 0.000 0.270 1100 2 11 80.681 1.08971e-12 0.000 0.000 0.685 0.315 0111 3 12 132.888 1.62279e-22 1.000 0.000 0.000 0.000 1011 3 12 401.771 0 0.000 1.000 0.000 0.000 1101 3 12 548.804 0 0.000 0.000 1.000 0.000 1110 3 12 1211.158 0 0.000 0.000 0.000 1.000 best pat: 0000 0.499215 - - best pat: 1000 0.438223 chi(nested): 1.675 p-value for nested model: 0.195579 best pat: 0011 0.000479826 not nested best pat: 0111 1.62279e-22 chi(nested): 99.641 p-value for nested model: 1.82668e-23 coeffs: -0.060 0.364 0.402 0.293 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000056 -0.128668 details: Russia_Afanasievo Papuan.DG -0.001825 -4.553446 details: Turkmenistan_Gonur_BA_1 Papuan.DG -0.003248 -7.438303 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007327 11.999040 dscore: Papuan.DG f4: 0.000182 Z: 0.450141 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000518 0.831362 details: Russia_Afanasievo China_Tianyuan -0.000447 -0.846960 details: Turkmenistan_Gonur_BA_1 China_Tianyuan -0.002909 -4.850923 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005491 6.754494 dscore: China_Tianyuan f4: 0.000248 Z: 0.447225 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001192 -2.441797 details: Russia_Afanasievo Karitiana.DG 0.001755 4.047426 details: Turkmenistan_Gonur_BA_1 Karitiana.DG -0.002950 -6.130469 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002193 3.307452 dscore: Karitiana.DG f4: 0.000168 Z: 0.373835 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001066 -1.973710 details: Russia_Afanasievo Russia_Ust_Ishim_HG.DG -0.000007 -0.014308 details: Turkmenistan_Gonur_BA_1 Russia_Ust_Ishim_HG.DG -0.001814 -3.690487 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002193 3.011066 dscore: Russia_Ust_Ishim_HG.DG f4: -0.000025 Z: -0.052476 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000123 0.255515 details: Russia_Afanasievo Ami.DG -0.001572 -3.709559 details: Turkmenistan_Gonur_BA_1 Ami.DG -0.003141 -6.917114 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006194 9.372889 dscore: Ami.DG f4: -0.000026 Z: -0.060359 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000318 -0.755098 details: Russia_Afanasievo Dai.DG -0.001715 -4.637838 details: Turkmenistan_Gonur_BA_1 Dai.DG -0.003385 -8.478527 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.005988 10.405028 dscore: Dai.DG f4: -0.000210 Z: -0.552095 details: Iran_ShahrISokhta_BA2 Han.DG -0.000144 -0.357393 details: Russia_Afanasievo Han.DG -0.001338 -3.796757 details: Turkmenistan_Gonur_BA_1 Han.DG -0.003175 -8.180636 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006067 11.229989 dscore: Han.DG f4: 0.000025 Z: 0.068320 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000930 -1.587984 details: Russia_Afanasievo Georgia_Kotias.SG 0.004547 8.589521 details: Turkmenistan_Gonur_BA_1 Georgia_Kotias.SG 0.003101 5.539287 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009618 -12.608017 dscore: Georgia_Kotias.SG f4: 0.000138 Z: 0.262237 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002187 -3.783066 details: Russia_Afanasievo Russia_Kostenki14.SG 0.002419 4.649143 details: Turkmenistan_Gonur_BA_1 Russia_Kostenki14.SG -0.000526 -0.912430 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004217 -5.668760 dscore: Russia_Kostenki14.SG f4: -0.000436 Z: -0.841112 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000414 0.991036 details: Russia_Afanasievo Iran_GanjDareh_N 0.001596 4.322561 details: Turkmenistan_Gonur_BA_1 Iran_GanjDareh_N 0.005059 12.646606 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009271 -15.989183 dscore: Iran_GanjDareh_N f4: -0.000129 Z: -0.343690 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002571 -6.652495 details: Russia_Afanasievo Turkey_N 0.003967 11.555648 details: Turkmenistan_Gonur_BA_1 Turkey_N 0.002252 6.111271 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008494 -16.426827 dscore: Turkey_N f4: 0.000013 Z: 0.037966 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004703 -7.985889 details: Russia_Afanasievo Luxembourg_Loschbour.DG 0.005749 10.925051 details: Turkmenistan_Gonur_BA_1 Luxembourg_Loschbour.DG -0.002266 -4.128736 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006264 -8.207171 dscore: Luxembourg_Loschbour.DG f4: -0.000372 Z: -0.705179 gendstat: Mbuti.DG Papuan.DG 0.450 gendstat: Mbuti.DG China_Tianyuan 0.447 gendstat: Mbuti.DG Karitiana.DG 0.374 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG -0.052 gendstat: Mbuti.DG Ami.DG -0.060 gendstat: Mbuti.DG Dai.DG -0.552 gendstat: Mbuti.DG Han.DG 0.068 gendstat: Mbuti.DG Georgia_Kotias.SG 0.262 gendstat: Mbuti.DG Russia_Kostenki14.SG -0.841 gendstat: Mbuti.DG Iran_GanjDareh_N -0.344 gendstat: Mbuti.DG Turkey_N 0.038 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.705 gendstat: Papuan.DG China_Tianyuan 0.127 gendstat: Papuan.DG Karitiana.DG -0.032 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.423 gendstat: Papuan.DG Ami.DG -0.505 gendstat: Papuan.DG Dai.DG -1.101 gendstat: Papuan.DG Han.DG -0.465 gendstat: Papuan.DG Georgia_Kotias.SG -0.078 gendstat: Papuan.DG Russia_Kostenki14.SG -1.157 gendstat: Papuan.DG Iran_GanjDareh_N -0.706 gendstat: Papuan.DG Turkey_N -0.421 gendstat: Papuan.DG Luxembourg_Loschbour.DG -1.022 gendstat: China_Tianyuan Karitiana.DG -0.145 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.447 gendstat: China_Tianyuan Ami.DG -0.521 gendstat: China_Tianyuan Dai.DG -0.962 gendstat: China_Tianyuan Han.DG -0.479 gendstat: China_Tianyuan Georgia_Kotias.SG -0.165 gendstat: China_Tianyuan Russia_Kostenki14.SG -1.009 gendstat: China_Tianyuan Iran_GanjDareh_N -0.656 gendstat: China_Tianyuan Turkey_N -0.425 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.922 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.367 gendstat: Karitiana.DG Ami.DG -0.482 gendstat: Karitiana.DG Dai.DG -1.089 gendstat: Karitiana.DG Han.DG -0.441 gendstat: Karitiana.DG Georgia_Kotias.SG -0.053 gendstat: Karitiana.DG Russia_Kostenki14.SG -1.072 gendstat: Karitiana.DG Iran_GanjDareh_N -0.669 gendstat: Karitiana.DG Turkey_N -0.368 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -1.007 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG -0.002 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.401 gendstat: Russia_Ust_Ishim_HG.DG Han.DG 0.108 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.258 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.690 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.207 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N 0.082 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.581 gendstat: Ami.DG Dai.DG -0.659 gendstat: Ami.DG Han.DG 0.200 gendstat: Ami.DG Georgia_Kotias.SG 0.286 gendstat: Ami.DG Russia_Kostenki14.SG -0.719 gendstat: Ami.DG Iran_GanjDareh_N -0.229 gendstat: Ami.DG Turkey_N 0.090 gendstat: Ami.DG Luxembourg_Loschbour.DG -0.589 gendstat: Dai.DG Han.DG 1.793 gendstat: Dai.DG Georgia_Kotias.SG 0.656 gendstat: Dai.DG Russia_Kostenki14.SG -0.427 gendstat: Dai.DG Iran_GanjDareh_N 0.204 gendstat: Dai.DG Turkey_N 0.606 gendstat: Dai.DG Luxembourg_Loschbour.DG -0.311 gendstat: Han.DG Georgia_Kotias.SG 0.218 gendstat: Han.DG Russia_Kostenki14.SG -0.896 gendstat: Han.DG Iran_GanjDareh_N -0.395 gendstat: Han.DG Turkey_N -0.032 gendstat: Han.DG Luxembourg_Loschbour.DG -0.773 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.916 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -0.531 gendstat: Georgia_Kotias.SG Turkey_N -0.263 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.826 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.606 gendstat: Russia_Kostenki14.SG Turkey_N 0.974 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG 0.110 gendstat: Iran_GanjDareh_N Turkey_N 0.430 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.463 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.854 ##end of qpAdm: 17.294 seconds cpu 1.380 Mbytes in use