qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 175313217 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Afanasievo Turkmenistan_Gonur_BA_2 Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 9 chisq: 19.408 tail: 0.0219400186 dofdiff: 11 chisqdiff: -19.408 taildiff: 1 B: scale 1.000 1.000 1.000 Papuan.DG -1.033 0.673 0.394 China_Tianyuan -0.624 0.588 -1.093 Karitiana.DG -0.049 1.257 -1.307 Russia_Ust_Ishim_HG.DG -0.249 0.661 0.912 Ami.DG -0.864 0.523 -0.647 Dai.DG -0.856 0.581 2.275 Han.DG -0.825 0.656 -1.245 Georgia_Kotias.SG 1.597 -0.082 -0.601 Russia_Kostenki14.SG 0.745 0.673 0.616 Iran_GanjDareh_N 1.234 -1.308 0.115 Turkey_N 1.390 0.693 0.408 Luxembourg_Loschbour.DG 1.325 2.343 0.211 A: scale 290.840 832.632 14063.698 Iran_ShahrISokhta_BA2 -0.265 -1.130 -1.458 Russia_Afanasievo 0.734 0.911 -1.020 Turkmenistan_Gonur_BA_2 -0.119 -1.082 -0.058 Indian_GreatAndaman_100BP.SG -1.837 0.850 -0.912 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 19.408 taildiff: 0.0219400186 B: scale 565.582 361.807 649.507 153.075 Papuan.DG -0.032 -0.660 -0.374 1.122 China_Tianyuan 0.293 -0.162 -0.721 0.840 Karitiana.DG -0.674 0.635 -1.079 0.336 Russia_Ust_Ishim_HG.DG -0.603 -0.002 -0.324 0.336 Ami.DG 0.069 -0.569 -0.577 0.948 Dai.DG -0.180 -0.621 -0.558 0.917 Han.DG -0.081 -0.484 -0.605 0.929 Georgia_Kotias.SG -0.526 1.645 -0.078 -1.472 Russia_Kostenki14.SG -1.237 0.875 -0.669 -0.646 Iran_GanjDareh_N 0.234 0.577 0.532 -1.419 Turkey_N -1.454 1.435 -1.352 -1.300 Luxembourg_Loschbour.DG -2.660 2.080 -2.549 -0.959 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Afanasievo 0.000 2.000 0.000 0.000 Turkmenistan_Gonur_BA_2 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: -0.399 0.383 0.861 0.155 totmean: -0.399 0.383 0.861 0.155 boot mean: 40.862 6.200 -44.501 -1.561 std. errors: 1796.895 256.939 1980.121 73.702 error covariance (* 1,000,000) 3228833094599 461659487478 -3558065007015 -132427575062 461659487478 66017798386 -508744086174 -18933199690 -3558065007015 -508744086174 3920880243537 145928849653 -132427575062 -18933199690 145928849653 5431925099 summ: Sohi 4 0.021940 40.862 6.200 -44.501 -1.561 3228833094599 461659487478 -3558065007015 -132427575062 66017798386 ... -508744086174 -18933199690 3920880243537 145928849653 5431925099 fixed pat wt dof chisq tail prob 0000 0 9 19.408 0.02194 -0.399 0.383 0.861 0.155 infeasible 0001 1 10 27.126 0.00248717 2.551 0.571 -2.122 0.000 infeasible 0010 1 10 23.254 0.0098482 0.448 0.440 0.000 0.112 0100 1 10 26.538 0.0030798 -5.986 0.000 6.572 0.413 infeasible 1000 1 10 24.511 0.00635281 0.000 0.403 0.464 0.133 0011 2 11 34.612 0.000287114 0.639 0.361 0.000 0.000 0101 2 11 148.208 3.4625e-26 0.334 0.000 0.666 0.000 0110 2 11 130.183 1.59841e-22 1.053 0.000 0.000 -0.053 infeasible 1001 2 11 51.529 3.318e-07 0.000 0.278 0.722 0.000 1010 2 11 88.834 2.81961e-14 0.000 0.728 0.000 0.272 1100 2 11 68.783 2.07989e-10 0.000 0.000 1.005 -0.005 infeasible 0111 3 12 135.375 5.12599e-23 1.000 0.000 0.000 0.000 1011 3 12 401.045 0 0.000 1.000 0.000 0.000 1101 3 12 69.007 4.91063e-10 0.000 0.000 1.000 0.000 1110 3 12 1206.559 0 0.000 0.000 0.000 1.000 best pat: 0000 0.02194 - - best pat: 1000 0.00635281 chi(nested): 5.104 p-value for nested model: 0.0238772 best pat: 0011 0.000287114 not nested best pat: 1101 4.91063e-10 not nested coeffs: -0.399 0.383 0.861 0.155 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000056 -0.128668 details: Russia_Afanasievo Papuan.DG -0.001825 -4.553446 details: Turkmenistan_Gonur_BA_2 Papuan.DG -0.000575 -0.993249 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007327 11.999040 dscore: Papuan.DG f4: -0.000037 Z: -0.067058 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000518 0.831362 details: Russia_Afanasievo China_Tianyuan -0.000447 -0.846960 details: Turkmenistan_Gonur_BA_2 China_Tianyuan -0.001110 -1.358041 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005491 6.754494 dscore: China_Tianyuan f4: -0.000483 Z: -0.642329 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001192 -2.441797 details: Russia_Afanasievo Karitiana.DG 0.001755 4.047426 details: Turkmenistan_Gonur_BA_2 Karitiana.DG -0.001661 -2.607692 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002193 3.307452 dscore: Karitiana.DG f4: 0.000058 Z: 0.097332 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001066 -1.973710 details: Russia_Afanasievo Russia_Ust_Ishim_HG.DG -0.000007 -0.014308 details: Turkmenistan_Gonur_BA_2 Russia_Ust_Ishim_HG.DG -0.000498 -0.746835 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002193 3.011066 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000334 Z: 0.536782 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000123 0.255515 details: Russia_Afanasievo Ami.DG -0.001572 -3.709559 details: Turkmenistan_Gonur_BA_2 Ami.DG -0.000888 -1.437419 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006194 9.372889 dscore: Ami.DG f4: -0.000456 Z: -0.785643 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000318 -0.755098 details: Russia_Afanasievo Dai.DG -0.001715 -4.637838 details: Turkmenistan_Gonur_BA_2 Dai.DG -0.000859 -1.562186 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.005988 10.405028 dscore: Dai.DG f4: -0.000342 Z: -0.658555 details: Iran_ShahrISokhta_BA2 Han.DG -0.000144 -0.357393 details: Russia_Afanasievo Han.DG -0.001338 -3.796757 details: Turkmenistan_Gonur_BA_2 Han.DG -0.000931 -1.780379 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006067 11.229989 dscore: Han.DG f4: -0.000317 Z: -0.650084 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000930 -1.587984 details: Russia_Afanasievo Georgia_Kotias.SG 0.004547 8.589521 details: Turkmenistan_Gonur_BA_2 Georgia_Kotias.SG -0.000120 -0.148320 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009618 -12.608017 dscore: Georgia_Kotias.SG f4: 0.000520 Z: 0.683543 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002187 -3.783066 details: Russia_Afanasievo Russia_Kostenki14.SG 0.002419 4.649143 details: Turkmenistan_Gonur_BA_2 Russia_Kostenki14.SG -0.001030 -1.298147 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004217 -5.668760 dscore: Russia_Kostenki14.SG f4: 0.000260 Z: 0.351770 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000414 0.991036 details: Russia_Afanasievo Iran_GanjDareh_N 0.001596 4.322561 details: Turkmenistan_Gonur_BA_2 Iran_GanjDareh_N 0.000819 1.387661 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009271 -15.989183 dscore: Iran_GanjDareh_N f4: -0.000286 Z: -0.524039 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002571 -6.652495 details: Russia_Afanasievo Turkey_N 0.003967 11.555648 details: Turkmenistan_Gonur_BA_2 Turkey_N -0.002082 -4.060993 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008494 -16.426827 dscore: Turkey_N f4: -0.000562 Z: -1.161708 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004703 -7.985889 details: Russia_Afanasievo Luxembourg_Loschbour.DG 0.005749 10.925051 details: Turkmenistan_Gonur_BA_2 Luxembourg_Loschbour.DG -0.003925 -5.508995 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006264 -8.207171 dscore: Luxembourg_Loschbour.DG f4: -0.000269 Z: -0.396870 gendstat: Mbuti.DG Papuan.DG -0.067 gendstat: Mbuti.DG China_Tianyuan -0.642 gendstat: Mbuti.DG Karitiana.DG 0.097 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.537 gendstat: Mbuti.DG Ami.DG -0.786 gendstat: Mbuti.DG Dai.DG -0.659 gendstat: Mbuti.DG Han.DG -0.650 gendstat: Mbuti.DG Georgia_Kotias.SG 0.684 gendstat: Mbuti.DG Russia_Kostenki14.SG 0.352 gendstat: Mbuti.DG Iran_GanjDareh_N -0.524 gendstat: Mbuti.DG Turkey_N -1.162 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.397 gendstat: Papuan.DG China_Tianyuan -0.627 gendstat: Papuan.DG Karitiana.DG 0.170 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG 0.598 gendstat: Papuan.DG Ami.DG -0.766 gendstat: Papuan.DG Dai.DG -0.646 gendstat: Papuan.DG Han.DG -0.625 gendstat: Papuan.DG Georgia_Kotias.SG 0.720 gendstat: Papuan.DG Russia_Kostenki14.SG 0.386 gendstat: Papuan.DG Iran_GanjDareh_N -0.415 gendstat: Papuan.DG Turkey_N -1.009 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.334 gendstat: China_Tianyuan Karitiana.DG 0.733 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG 1.061 gendstat: China_Tianyuan Ami.DG 0.037 gendstat: China_Tianyuan Dai.DG 0.214 gendstat: China_Tianyuan Han.DG 0.257 gendstat: China_Tianyuan Georgia_Kotias.SG 1.087 gendstat: China_Tianyuan Russia_Kostenki14.SG 0.794 gendstat: China_Tianyuan Iran_GanjDareh_N 0.258 gendstat: China_Tianyuan Turkey_N -0.107 gendstat: China_Tianyuan Luxembourg_Loschbour.DG 0.242 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG 0.407 gendstat: Karitiana.DG Ami.DG -0.953 gendstat: Karitiana.DG Dai.DG -0.860 gendstat: Karitiana.DG Han.DG -0.871 gendstat: Karitiana.DG Georgia_Kotias.SG 0.599 gendstat: Karitiana.DG Russia_Kostenki14.SG 0.257 gendstat: Karitiana.DG Iran_GanjDareh_N -0.589 gendstat: Karitiana.DG Turkey_N -1.169 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.482 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG -1.220 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -1.169 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -1.152 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG 0.218 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.092 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.940 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -1.528 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.783 gendstat: Ami.DG Dai.DG 0.303 gendstat: Ami.DG Han.DG 0.404 gendstat: Ami.DG Georgia_Kotias.SG 1.249 gendstat: Ami.DG Russia_Kostenki14.SG 0.886 gendstat: Ami.DG Iran_GanjDareh_N 0.281 gendstat: Ami.DG Turkey_N -0.191 gendstat: Ami.DG Luxembourg_Loschbour.DG 0.251 gendstat: Dai.DG Han.DG 0.136 gendstat: Dai.DG Georgia_Kotias.SG 1.164 gendstat: Dai.DG Russia_Kostenki14.SG 0.802 gendstat: Dai.DG Iran_GanjDareh_N 0.105 gendstat: Dai.DG Turkey_N -0.454 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.109 gendstat: Han.DG Georgia_Kotias.SG 1.154 gendstat: Han.DG Russia_Kostenki14.SG 0.784 gendstat: Han.DG Iran_GanjDareh_N 0.060 gendstat: Han.DG Turkey_N -0.538 gendstat: Han.DG Luxembourg_Loschbour.DG 0.074 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.278 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N -1.142 gendstat: Georgia_Kotias.SG Turkey_N -1.641 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG -0.958 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.725 gendstat: Russia_Kostenki14.SG Turkey_N -1.205 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG -0.655 gendstat: Iran_GanjDareh_N Turkey_N -0.607 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG 0.025 gendstat: Turkey_N Luxembourg_Loschbour.DG 0.498 ##end of qpAdm: 17.490 seconds cpu 1.380 Mbytes in use